Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
☆32Mar 21, 2019Updated 7 years ago
Alternatives and similar repositories for ceres
Users that are interested in ceres are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Oct 15, 2020Updated 5 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 7 years ago
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- Perturb-seq analysis package☆16May 2, 2024Updated last year
- Phenotype detection in pooled genetic perturbation screens☆12Mar 13, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Nov 17, 2025Updated 4 months ago
- Modeling of time series data for CRISPR KO experiments☆38Updated this week
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆15Jul 17, 2021Updated 4 years ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 4 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆80May 21, 2020Updated 5 years ago
- DRUGZ software☆24Aug 9, 2021Updated 4 years ago
- BAGEL software☆28Jan 30, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- R package of utilities for handling paths, files and directories☆18Jan 14, 2019Updated 7 years ago
- ☆12Sep 2, 2024Updated last year
- toolkit for analyzing genome editing experiments☆21Mar 3, 2026Updated 3 weeks ago
- Dockerised and simplified version of SeqWare-CGP-SomaticCore☆14Mar 5, 2021Updated 5 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated last year
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Oct 7, 2022Updated 3 years ago
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 5 years ago
- Random Circuit Perturbation Method☆16Jun 29, 2020Updated 5 years ago
- A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data☆12Feb 1, 2024Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Jun 21, 2022Updated 3 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 2 years ago
- CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.☆13Oct 18, 2021Updated 4 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆25May 18, 2021Updated 4 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆16Nov 30, 2024Updated last year
- ☆13Updated this week
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Ultra-efficient taxonomic mapping of NGS data☆51Mar 26, 2021Updated 5 years ago
- Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system☆25Jan 8, 2018Updated 8 years ago
- Python implementation of TEISER also capable of using SHAPE structural probing data☆12Jan 7, 2025Updated last year
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆54Apr 28, 2023Updated 2 years ago
- Cancer Dependency Map package☆33Aug 16, 2024Updated last year
- Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)☆19Apr 27, 2015Updated 10 years ago
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 3 years ago