lemaslab / rumpLinks
A Reproducible Untargeted Metabolomics Data Processing Pipeline
☆11Updated 4 years ago
Alternatives and similar repositories for rump
Users that are interested in rump are comparing it to the libraries listed below
Sorting:
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 5 years ago
- Notebooks in computational metabolomics☆15Updated 11 months ago
- Single sample pathway analysis tools for omics data☆13Updated last year
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Updated 4 years ago
- R interface to Chemical Translation Service (CTS)☆17Updated last year
- PathIntegrate Python package for pathway-based multi-omics data integration☆18Updated last year
- Workflow4Metabolomics meta repository☆11Updated 7 months ago
- R Interface to the Metabolights REST API☆11Updated 4 months ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13Updated last year
- ☆14Updated last month
- Rocker image for metabolomics data analysis☆13Updated 2 months ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Updated 3 years ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆22Updated 4 years ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆11Updated 8 months ago
- Proof of concept to use ansible + Lmod to deploy a bioinformatics server☆24Updated 7 months ago
- R for Mass Spectrometry documentation☆14Updated last month
- Core Utils for Mass Spectrometry Data☆17Updated 3 weeks ago
- Missing value imputation and evaluation, especially for metabolomics data sets☆19Updated 7 years ago
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…☆11Updated 7 months ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Updated 7 years ago
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Updated 4 years ago
- Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis☆18Updated 2 years ago
- Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, …☆15Updated 7 years ago
- A set of processes/pipelines for bioinformatics☆13Updated 3 weeks ago
- Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…☆20Updated 7 years ago
- Metabolomics experimental design, sample metadata configuration, and sample data acquisition.☆11Updated 7 years ago
- 5-day workshop on Metabolomics and Data Analysis☆18Updated 6 years ago
- GC/LC-MS data analysis for environmental science☆17Updated 7 months ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆12Updated last month
- A package to cluster and visualise MS/MS spectral data☆11Updated 4 years ago