lemaslab / rump
A Reproducible Untargeted Metabolomics Data Processing Pipeline
☆11Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for rump
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 4 years ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Updated 3 years ago
- Single sample pathway analysis tools for omics data☆11Updated this week
- R codes for creating metamapp graphs and files☆8Updated 2 years ago
- ☆12Updated last month
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆16Updated 3 weeks ago
- R interface to Chemical Translation Service (CTS)☆14Updated 3 months ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆11Updated 2 months ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 2 years ago
- Class materials for the NIH HPC snakemake class☆16Updated last month
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 2 years ago
- Quickly find and score consensus between metabolite identifications and gene annotations☆17Updated last year
- Github for files currently published in the IPD-MHC FTP Directory hosted at the European Bioinformatics Institute☆12Updated 3 months ago
- Missing value imputation and evaluation, especially for metabolomics data sets☆18Updated 6 years ago
- ☆13Updated 7 years ago
- Workflow4Metabolomics meta repository☆10Updated 2 years ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆21Updated 3 years ago
- R Interface to the Metabolights REST API☆10Updated 8 months ago
- Integrated Machine Learning for Multi-omics Classification and Prediction☆18Updated last week
- Notebooks in computational metabolomics☆13Updated 3 years ago
- Repository of Nextflow+BioContainers workflows☆14Updated 3 years ago
- k-mer similarity analysis pipeline☆19Updated last year
- Metabolomics Tools for Galaxy☆21Updated 7 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 3 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 3 years ago
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆12Updated 2 months ago
- Interactive bioinformatics tutorials☆24Updated this week
- Core utilities for metabolomics.☆9Updated last month