lemaslab / rumpLinks
A Reproducible Untargeted Metabolomics Data Processing Pipeline
☆11Updated 4 years ago
Alternatives and similar repositories for rump
Users that are interested in rump are comparing it to the libraries listed below
Sorting:
- Notebooks in computational metabolomics☆15Updated 8 months ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 5 years ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆17Updated 11 months ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Updated 4 years ago
- Single sample pathway analysis tools for omics data☆13Updated 11 months ago
- ☆14Updated 2 weeks ago
- Github for files currently published in the IPD-MHC FTP Directory hosted at the European Bioinformatics Institute☆15Updated 2 months ago
- R Interface to the Metabolights REST API☆11Updated 2 months ago
- Workflow4Metabolomics meta repository☆11Updated 4 months ago
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…☆10Updated 4 months ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆12Updated last year
- R interface to Chemical Translation Service (CTS)☆17Updated last year
- Proof of concept to use ansible + Lmod to deploy a bioinformatics server☆24Updated 4 months ago
- Core Utils for Mass Spectrometry Data☆17Updated 6 months ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆21Updated 4 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆23Updated last month
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Updated 3 years ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Updated 7 years ago
- Quickly find and score consensus between metabolite identifications and gene annotations☆18Updated 10 months ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆12Updated last week
- ☆21Updated 9 years ago
- A set of processes/pipelines for bioinformatics☆13Updated this week
- Luslab nextflow modules☆14Updated 4 years ago
- 5-day workshop on Metabolomics and Data Analysis☆17Updated 6 years ago
- ☆10Updated 6 years ago
- Interactive bioinformatics tutorials☆34Updated last month
- RNA-seq data comprehensive data analysis toolbox☆19Updated 3 years ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆17Updated 4 months ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆23Updated 4 months ago
- Bioinformatics for Benched Biologists☆22Updated 5 years ago