A unified framework for identifying multicellular niches and niche-regulated cell states from spatial transcriptomics data.
☆16Aug 3, 2026Updated 2 months ago
Alternatives and similar repositories for NicheScope
Users that are interested in NicheScope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links☆25Jun 10, 2025Updated last year
- ☆10Jul 8, 2022Updated 4 years ago
- Research skills for Claude Code, Codex, and OpenCode.☆23Sep 30, 2026Updated last month
- Cross-population analysis using GWAS summary statistics☆21Jun 25, 2024Updated 2 years ago
- mapping somatic variants to cell barcodes in scRNA-Seq data☆11Sep 21, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SANTO: a coarse-to-fine stitching and alignment method for spatial omics☆16Jun 27, 2024Updated 2 years ago
- SPAtial Transcriptomics resource for subCellular and High-throughput platforms☆25Dec 10, 2024Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆19Apr 20, 2024Updated 2 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆17Aug 1, 2025Updated last year
- ☆14Jun 10, 2025Updated last year
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 5 months ago
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆23May 28, 2026Updated 5 months ago
- ☆37Oct 4, 2024Updated 2 years ago
- scVIVA-Tools: A unified toolkit for spatial transcriptomics analysis☆15Oct 21, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago
- Single-cell spatial elucidation through image-augmented graph transformer☆32Jul 7, 2023Updated 3 years ago
- ☆16Apr 4, 2023Updated 3 years ago
- Phenotype Associated Spatial Signature Analysis with Graph-based Embedding☆27Mar 5, 2025Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆34Jul 13, 2023Updated 3 years ago
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Jul 23, 2023Updated 3 years ago
- Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics☆45Aug 28, 2026Updated 2 months ago
- ☆15Sep 12, 2023Updated 3 years ago
- codes for article☆18Jan 14, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆17May 26, 2026Updated 5 months ago
- ☆22Jul 21, 2025Updated last year
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 4 years ago
- A set of files to do genomics analysis on python☆19Jun 5, 2025Updated last year
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆74Nov 20, 2023Updated 2 years ago
- ☆10Dec 19, 2024Updated last year
- ☆139Jun 10, 2022Updated 4 years ago
- ☆30Mar 12, 2026Updated 7 months ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆135May 29, 2025Updated last year
- Charting spatial ligand-target activity using Renoir (ligand-taRgEt iNteractions acrOss spatIal topogRaphy)☆23Jun 26, 2026Updated 4 months ago
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscript☆11Jan 30, 2020Updated 6 years ago
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- tension inference for epithelial cells☆20Nov 6, 2023Updated 2 years ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 10 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆84May 24, 2024Updated 2 years ago