moonso / vcf_parserLinks
Simple vcf parser, based on PyVCF
☆46Updated 6 years ago
Alternatives and similar repositories for vcf_parser
Users that are interested in vcf_parser are comparing it to the libraries listed below
Sorting:
- An awk-like VCF parser☆56Updated last year
- Read visualizer for structural variants☆84Updated 7 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆82Updated 2 weeks ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆57Updated 8 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- TIDDIT - structural variant calling☆76Updated 4 months ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- My bioinfo toolbox☆50Updated 6 months ago
- (WIP) best-practices workflow for rare disease☆60Updated last year
- ☆54Updated 5 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 4 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- Ancestry and Kinship Tools☆70Updated 2 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago