moonso / vcf_parserLinks
Simple vcf parser, based on PyVCF
☆47Updated 6 years ago
Alternatives and similar repositories for vcf_parser
Users that are interested in vcf_parser are comparing it to the libraries listed below
Sorting:
- Read visualizer for structural variants☆84Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated last month
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- NextSeq specific bcl2fastq2 wrapper.☆55Updated 4 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆67Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- ☆46Updated 5 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 5 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 10 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- ☆54Updated 5 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 11 months ago