moonso / vcf_parser
Simple vcf parser, based on PyVCF
☆44Updated 5 years ago
Related projects: ⓘ
- Read visualizer for structural variants☆80Updated 6 years ago
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- An awk-like VCF parser☆54Updated 8 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆60Updated last year
- for visual evaluation of read support for structural variation☆49Updated 3 months ago
- Data and information about the Polaris study☆52Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- simple library for dealing with SAM cigar strings☆40Updated 3 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- (WIP) best-practices workflow for rare disease☆58Updated 2 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆135Updated 3 months ago
- Galaxy RNA workbench☆38Updated 3 years ago
- Powerful statistics for VCF files☆60Updated 11 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆100Updated 3 years ago
- UCSC Nanopore☆42Updated 5 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆42Updated 6 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆74Updated 7 months ago
- ☆78Updated 10 years ago
- Structural Variant Index☆66Updated 5 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated last year
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆32Updated 7 years ago
- Comprehensive benchmark of structural variant callers☆42Updated 3 years ago
- Generic human DNA variant annotation pipeline☆55Updated 7 months ago
- Support Vector Structural Variation Genotyper☆58Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆94Updated 2 years ago
- Burden testing against public controls☆49Updated 6 months ago