JohnLonginotto / pybam
Very simple, pure python, BAM file reader
☆79Updated 5 years ago
Related projects: ⓘ
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆135Updated 3 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- Read visualizer for structural variants☆80Updated 6 years ago
- Tip and tricks for BAM files☆82Updated 6 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆68Updated 2 years ago
- PHAST☆67Updated last year
- Scallop is a reference-based transcriptome assembler for RNA-seq☆88Updated 3 years ago
- ☆94Updated this week
- Tools and software library developed by the ONT Applications group☆61Updated 3 years ago
- ☆110Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- ☆78Updated 10 years ago
- Same species annotation lift over pipeline.☆95Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆74Updated 7 months ago
- NEAT read simulation tools☆95Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆94Updated 2 years ago
- ☆80Updated this week
- Wally: Visualization of aligned sequencing reads and contigs☆106Updated 7 months ago
- ABRA2☆90Updated last year
- BAM Statistics, Feature Counting and Annotation☆142Updated this week
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆75Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 9 months ago
- LoFreq Star: Sensitive variant calling from sequencing data☆100Updated 2 years ago
- Galaxy RNA workbench☆38Updated 3 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 3 years ago
- Merging paired-end reads and removing adapters☆44Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated 10 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆51Updated last year
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 3 years ago
- Fast and accurate coordinate conversion between assemblies☆106Updated 2 months ago