Alternatives and similar repositories for MOVE

Users that are interested in MOVE are comparing it to the libraries listed below

• Lifoof / MoGCN
  Multi-omics integration method using AE and GCN
  ☆34Updated last year
• cantinilab / momix-notebook
  ☆66Updated last year
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆132Updated 2 years ago
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆67Updated 2 years ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆55Updated 2 years ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆43Updated 9 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆154Updated 2 years ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆90Updated 4 years ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆47Updated 4 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 4 months ago
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆22Updated 9 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆128Updated 3 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆141Updated last year
• labomics / midas
  ☆54Updated last month
• ratschlab / DeepSpot
  DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images
  ☆45Updated 2 weeks ago
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆52Updated last week
• Durenlab / LINGER
  ☆106Updated 3 weeks ago
• lanagarmire / Asgard
  ☆42Updated last year
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆84Updated this week
• suinleelab / deepprofile-study
  Code for paper "A deep profile of gene expression across 18 human cancers"
  ☆25Updated 5 months ago
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated this week
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆117Updated 2 weeks ago
• CompEpigen / methylbert
  A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
  ☆31Updated 2 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆95Updated 2 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆65Updated 2 years ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆95Updated 11 months ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆104Updated last month
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 10 months ago
• Hua0113 / DCAP
  DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis
  ☆21Updated 4 years ago