Alternatives and similar repositories for deepprofile-study

Users that are interested in deepprofile-study are comparing it to the libraries listed below

• NCICCGPO / gdan-tmp-models
  Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
  ☆27Updated 5 months ago
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆44Updated 6 months ago
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆57Updated last year
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆37Updated 2 years ago
• ruppinlab / tcga-microbiome-prediction
  Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…
  ☆18Updated 10 months ago
• JinmiaoChenLab / ezSingleCell2
  ☆57Updated last year
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• KevinMenden / scaden
  Deep Learning based cell composition analysis with Scaden.
  ☆82Updated 10 months ago
• GerkeLab / TCGAhrd
  Homologous recombination deficiency in TCGA PanCancer Atlas
  ☆28Updated 4 years ago
• pathint / reoa
  Relative Expression Ordering Analysis (REOA) package
  ☆21Updated 2 years ago
• secrierlab / SpottedPy
  Hotspot cluster distance analysis in spatial transcriptomic data
  ☆29Updated 7 months ago
• TebaldiLab / cellmarkeraccordion
  ☆10Updated last month
• STOmics / StereoMMv1
  StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…
  ☆37Updated 3 months ago
• yal054 / epiformer
  ☆26Updated 5 months ago
• datapplab / AutoClass
  ☆44Updated 3 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• ncbi-nlp / GeneAgent
  The code for gene set analysis by accessing domain databases
  ☆71Updated last month
• sidhomj / DeepTCR_Cancer
  Deep learning reveals predictive sequence concepts within immune repertoires to immunotherapy
  ☆15Updated 3 years ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆55Updated 2 years ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆96Updated last year
• TheHumphreysLab / MALDIpy
  MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)
  ☆13Updated last year
• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆48Updated last year
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆20Updated 8 months ago
• SmritiChawla / Precily
  ☆31Updated 3 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆35Updated 3 years ago
• jbergenstrahle / STUtility
  ☆53Updated 2 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• ebecht / MCPcounter
  ☆59Updated 3 years ago