Alternatives and similar repositories for deepprofile-study:

Users that are interested in deepprofile-study are comparing it to the libraries listed below

• NCICCGPO / gdan-tmp-models
  Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
  ☆23Updated last week
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆54Updated 2 years ago
• GerkeLab / TCGAhrd
  Homologous recombination deficiency in TCGA PanCancer Atlas
  ☆27Updated 4 years ago
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆43Updated last month
• Patchouli-M / SequencingCancerFinder
  ☆32Updated this week
• ruppinlab / tcga-microbiome-prediction
  Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…
  ☆16Updated 5 months ago
• STOmics / StereoMMv1
  StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…
  ☆31Updated 2 weeks ago
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆20Updated 4 months ago
• JinmiaoChenLab / ezSingleCell2
  ☆54Updated last year
• Nanostring-Biostats / SpatialDecon
  The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…
  ☆38Updated 4 months ago
• AI4SCR / ATHENA
  ☆31Updated 3 months ago
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆52Updated last year
• muhligs / miReact
  Estimate microRNA activity in single cells
  ☆11Updated 2 years ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated last year
• secrierlab / SpottedPy
  Hotspot cluster distance analysis in spatial transcriptomic data
  ☆26Updated 2 months ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆39Updated last year
• sidhomj / DeepTCR_Cancer
  Deep learning reveals predictive sequence concepts within immune repertoires to immunotherapy
  ☆16Updated 2 years ago
• maximemeylan / Meylan_et_al_2022
  ☆19Updated 3 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆53Updated 2 years ago
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆113Updated 7 months ago
• Sage-Bionetworks / CMSclassifier
  ☆30Updated 8 years ago
• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆48Updated last year
• pathint / reoa
  Relative Expression Ordering Analysis (REOA) package
  ☆20Updated 2 years ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆48Updated 2 months ago
• theislab / spatial_scog_workshop_2022
  Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
  ☆53Updated 2 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆16Updated 9 months ago
• lanagarmire / Asgard
  ☆42Updated last year
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆51Updated 3 weeks ago
• kkang7 / CDSeq_R_Package
  CDSeq R Package
  ☆20Updated 2 years ago
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆18Updated 3 years ago