Alternatives and similar repositories for rcgrep

Users that are interested in rcgrep are comparing it to the libraries listed below

• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆57Updated 3 months ago
• will-rowe / groot
  A resistome profiler for Graphing Resistance Out Of meTagenomes
  ☆65Updated 5 years ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆82Updated 5 months ago
• GATB / simka
  Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
  ☆51Updated 4 years ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆77Updated 9 years ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆48Updated this week
• dayzerodx / counterr
  ☆30Updated last year
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆31Updated last month
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 7 months ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆98Updated 2 weeks ago
• PacificBiosciences / kineticsTools
  Tools for detecting DNA modifications from single molecule, real-time sequencing data
  ☆27Updated 3 years ago
• snacktavish / TreeToReads
  Pipeline to generate NGS reads from a phylogeny
  ☆39Updated 3 years ago
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆55Updated 7 months ago
• refresh-bio / kmer-db
  Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…
  ☆97Updated 8 months ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆104Updated last week
• rdrp-summit / awesome-rna-virus-tools
  An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses
  ☆21Updated 5 months ago
• rrwick / Verticall
  Recombination-free trees
  ☆63Updated 5 months ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated 2 years ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆88Updated 3 years ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆27Updated 2 years ago
• Shamir-Lab / Recycler
  This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…
  ☆58Updated 4 years ago
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆49Updated 4 years ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆28Updated last month
• chrisquince / DESMAN
  De novo Extraction of Strains from MetAgeNomes
  ☆72Updated 5 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆55Updated last year
• lczech / gappa
  A toolkit for analyzing and visualizing phylogenetic placement data
  ☆62Updated 3 months ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆37Updated last year
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆53Updated 4 years ago
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆54Updated last year