Alternatives and similar repositories for rcgrep

Users that are interested in rcgrep are comparing it to the libraries listed below

• schmeing / ReSeq
  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
  ☆51Updated 3 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆53Updated last year
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆76Updated 9 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆76Updated last year
• refresh-bio / kmer-db
  Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…
  ☆93Updated 4 months ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆79Updated 3 weeks ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 2 months ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆25Updated 2 years ago
• GATB / simka
  Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
  ☆48Updated 3 years ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated 2 years ago
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆49Updated 4 years ago
• mourisl / centrifuger
  Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.
  ☆65Updated last week
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆47Updated 6 months ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆92Updated last month
• dayzerodx / counterr
  ☆31Updated last year
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆56Updated last week
• lczech / gappa
  A toolkit for analyzing and visualizing phylogenetic placement data
  ☆62Updated 7 months ago
• GATB / dsk
  k-mer counting software
  ☆39Updated 3 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated last month
• BioInf-Wuerzburg / proovread
  PacBio hybrid error correction through iterative short read consensus
  ☆60Updated 6 years ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆74Updated 7 months ago
• lexnederbragt / developments-in-next-generation-sequencing
  Developments in next generation sequencing: instruments, read lengths, throughput. See
  ☆27Updated 7 years ago
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆50Updated last month
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated last week
• bioinfologics / w2rap-contigger
  An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
  ☆45Updated 2 years ago
• ryanmelnyk / PyParanoid
  Rapid and scalable homolog identification for bacterial genomes
  ☆33Updated 6 years ago
• marbl / VALET
  A pipeline for detecting mis-assemblies in metagenomic assemblies.
  ☆14Updated 7 years ago
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆53Updated 2 months ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆85Updated 2 years ago