mancusolab / twas_simLinks
Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
☆29Updated 2 years ago
Alternatives and similar repositories for twas_sim
Users that are interested in twas_sim are comparing it to the libraries listed below
Sorting:
- Mediated Expression Score Regression (MESC)☆26Updated 2 weeks ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆47Updated 2 years ago
- ☆23Updated 3 months ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆51Updated 8 months ago
- Cross-population fine-mapping☆39Updated 11 months ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆25Updated last year
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆43Updated 11 months ago
- Colocalization analysis of genetic association signals☆53Updated 5 months ago
- ☆22Updated 2 months ago
- software package for integrative genetic association analysis☆35Updated 2 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆34Updated 5 years ago
- ☆13Updated 2 years ago
- causal TWAS (cTWAS)☆47Updated this week
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- QTL Discovery using Annotations☆28Updated 2 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Fine-mapping with infinitesimal effects☆20Updated 5 months ago
- Pan-transcriptomic phenotyping☆19Updated 2 weeks ago
- ☆24Updated 4 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- Primo☆16Updated 4 years ago
- ☆21Updated 2 years ago
- Stratified squared trans-ethnic genetic correlation☆14Updated 3 years ago
- R package to perform Bayesian Genome-Wide Association Studies☆41Updated 2 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆41Updated 2 years ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆28Updated 3 months ago
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆23Updated 7 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated 2 years ago
- ☆63Updated 3 years ago