mancusolab / twas_simLinks
Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
☆28Updated 2 years ago
Alternatives and similar repositories for twas_sim
Users that are interested in twas_sim are comparing it to the libraries listed below
Sorting:
- Mediated Expression Score Regression (MESC)☆26Updated 3 years ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated 2 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆49Updated 6 months ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆24Updated 10 months ago
- ☆62Updated 3 years ago
- Cross-population fine-mapping☆37Updated 9 months ago
- Colocalization analysis of genetic association signals☆54Updated 3 months ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- ☆13Updated 2 years ago
- ☆21Updated 2 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated this week
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated last year
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 5 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆40Updated 2 years ago
- Pan-transcriptomic phenotyping☆18Updated 2 weeks ago
- ☆23Updated last month
- Fast, integrative fine mapping with functional data☆60Updated 6 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 9 months ago
- causal TWAS (cTWAS)☆45Updated last month
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆13Updated last year
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆27Updated last month
- R package to perform Bayesian Genome-Wide Association Studies☆40Updated last year
- QTL Discovery using Annotations☆25Updated 2 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 9 months ago
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆23Updated 7 years ago
- ☆40Updated 7 years ago
- ☆23Updated 4 years ago