Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
☆32Jun 18, 2023Updated 3 years ago
Alternatives and similar repositories for twas_sim
Users that are interested in twas_sim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software to infer latent pleiotropic components from GWAS summary data☆17Jan 30, 2025Updated last year
- Leveraging functional information to improve GWAS summary statistic imputation☆21Aug 10, 2021Updated 5 years ago
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 4 years ago
- Estimate genetic correlation using predicted expression☆28Mar 8, 2018Updated 8 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆47Aug 30, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Mediated Expression Score Regression (MESC)☆30Nov 4, 2025Updated 10 months ago
- ☆26Jan 8, 2026Updated 8 months ago
- Fine-mapping method only using summary statistics☆20Mar 23, 2016Updated 10 years ago
- ☆21Nov 15, 2024Updated last year
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆43Apr 26, 2024Updated 2 years ago
- ☆20Sep 20, 2021Updated 5 years ago
- ☆13Jan 30, 2025Updated last year
- 3D GWAS across multiple phenotypes☆13Oct 11, 2022Updated 3 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆45Sep 18, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Scalable Ultra-Sparse Bayesian PCA☆32Feb 13, 2024Updated 2 years ago
- ☆57Jan 16, 2025Updated last year
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆34Aug 7, 2026Updated last month
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆29Jul 30, 2025Updated last year
- R script that performs gene-set or gene property analysis using TWAS results.☆34Sep 11, 2026Updated last week
- Code for multivariate genome wide association meta analysis☆25Aug 20, 2019Updated 7 years ago
- Create Regional Association Plots☆13May 27, 2026Updated 3 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 3 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆15Jul 2, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆12Sep 1, 2022Updated 4 years ago
- ☆36Dec 19, 2023Updated 2 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆47Mar 16, 2026Updated 6 months ago
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- ☆15Apr 20, 2021Updated 5 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 3 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 6 years ago
- ☆13Feb 2, 2023Updated 3 years ago
- Code and simulations using interaction-LD score regression☆13Jul 2, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- methods for functional summary-based imputation☆110Mar 17, 2026Updated 6 months ago
- ☆13Jul 4, 2023Updated 3 years ago
- Software implementing the Latent Causal Variable Model☆69Jun 30, 2020Updated 6 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆43May 2, 2018Updated 8 years ago
- ☆99Jul 21, 2025Updated last year
- A list of awesome tools for complex trait genetics.☆88Jan 28, 2025Updated last year
- Network representation of LDSC results☆33Mar 16, 2022Updated 4 years ago