BD2KGenomics / cgl-docker-libLinks
☆21Updated 6 years ago
Alternatives and similar repositories for cgl-docker-lib
Users that are interested in cgl-docker-lib are comparing it to the libraries listed below
Sorting:
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆85Updated 9 months ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- ☆62Updated 8 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- A pipeline for Human GWAS analysis that accomodates both Affymetrix (raw .CEL files) and Illumina (Plink binaries) data☆12Updated 7 years ago
- C++ Library to parse Illumina InterOp files☆78Updated last month
- Mutation Identification Pipeline. Read the latest documentation:☆45Updated last year
- Assembly Based ReAligner☆74Updated 7 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A needle plot for mutation data☆26Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- ☆82Updated 6 years ago
- ☆29Updated 3 years ago
- See the main fork of this repository here >>>☆38Updated 2 months ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Updated 5 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- python access to UCSC genomes database☆136Updated 4 years ago