Alternatives and similar repositories for cgl-docker-lib:

Users that are interested in cgl-docker-lib are comparing it to the libraries listed below

• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 5 years ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆83Updated 7 months ago
• statgen / gotcloud
  Genomes on the Cloud, Mapping & Variant Calling Pipelines
  ☆34Updated 8 years ago
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 8 years ago
• broadinstitute / wdltool
  ☆18Updated 7 years ago
• gt1 / biobambam2
  Tools for early stage alignment file processing
  ☆93Updated 6 years ago
• ewels / nf-core-rnaseq
  See the main fork of this repository here >>>
  ☆38Updated 2 months ago
• DaehwanKimLab / hisat
  Fast spliced aligner with low memory requirements
  ☆41Updated 9 years ago
• robinandeer / puzzle
  Variant caller GUI + genetic disease analysis
  ☆22Updated 5 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated 5 months ago
• mozack / abra
  Assembly Based ReAligner
  ☆73Updated 6 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• Cibiv / Teaser
  A tool to benchmark mappers and different parameters within minutes
  ☆44Updated 5 years ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated 2 weeks ago
• brentp / bigly
  a pileup library that embraces the huge
  ☆42Updated 4 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• nf-core / cookiecutter
  DEPRECIATED! Please use nf-core/tools instead
  ☆19Updated 6 years ago
• IARCbioinfo / needlestack
  Multi-sample somatic variant caller
  ☆50Updated 3 years ago
• aquaskyline / Skyhawk
  An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
  ☆35Updated last year
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆98Updated 2 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 4 years ago
• RCollins13 / CNView
  Visualization and annotation of CNVs from population-scale whole-genome sequencing data
  ☆71Updated 7 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated 2 years ago
• bio-tools / ToolDog
  Generating tool descriptors from bio.tools
  ☆9Updated 6 years ago
• ericminikel / minimal_representation
  Convert genetic variants to minimal representation
  ☆23Updated 7 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 7 years ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago
• CGGOxford / Opossum
  Opossum is a tool to pre-process RNA-seq reads prior to variant calling.
  ☆28Updated 6 years ago
• statgen / topmed_freeze3_calling
  TOPMed Freeze 3 variant calling pipeline
  ☆9Updated 6 years ago