Alternatives and similar repositories for cgl-docker-lib

Users that are interested in cgl-docker-lib are comparing it to the libraries listed below

• DaehwanKimLab / hisat
  Fast spliced aligner with low memory requirements
  ☆41Updated 9 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 8 years ago
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆62Updated 8 years ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆86Updated 10 months ago
• BD2KGenomics / protect
  ☆29Updated 3 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 7 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆59Updated last week
• KHP-Informatics / ngseasy
  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
  ☆86Updated 8 years ago
• bcbio / bcbio-nextgen-vm
  Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
  ☆67Updated 5 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 6 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 4 years ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated last month
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• mozack / abra
  Assembly Based ReAligner
  ☆74Updated 7 years ago
• liyao001 / BioQueue
  A novel pipeline framework to accelerate bioinformatics analysis
  ☆30Updated 2 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆51Updated 8 months ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• sanger-pathogens / companion
  This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
  ☆21Updated 4 years ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆79Updated last month
• genome / somatic-sniper
  A tool to call somatic single nucleotide variants.
  ☆41Updated 9 years ago
• IARCbioinfo / IARC-nf
  List of IARC bioinformatics pipelines and resources
  ☆51Updated 3 weeks ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 6 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆40Updated 6 years ago
• magosil86 / witsGWAS
  A pipeline for Human GWAS analysis that accomodates both Affymetrix (raw .CEL files) and Illumina (Plink binaries) data
  ☆12Updated 7 years ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆11Updated 5 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated 2 years ago