majelli / Rt
Bayesian estimation of Rt (C code)
☆13Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for Rt
- R package for deriving social mixing matrices from survey data.☆38Updated this week
- Excess deaths due to COVID-19 pandemic in 2020☆10Updated 2 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated last year
- R Package for individual based epidemiological models☆30Updated 2 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆15Updated 6 months ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Source code for the EpiEstim app.☆31Updated 4 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆14Updated 5 years ago
- SEIR transmission model of COVID-19. Documentation at:☆50Updated 9 months ago
- epidemia package☆47Updated 2 years ago
- Updates to the synthetic contact matrices☆36Updated last year
- ☆17Updated 3 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 11 months ago
- Analysis of excess mortality in Italy during the COVID-19 pandemic☆15Updated 5 months ago
- An R package with Dynamic Models of infectious diseases☆29Updated last week
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆18Updated 11 months ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 3 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆94Updated 2 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆115Updated this week
- ☆19Updated last year
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- Modelling transmission dynamics of COVID-19, while accounting for presymptomatic infectiousness, time-varying ascertainment rates, transm…☆21Updated 4 years ago
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆23Updated 3 years ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆52Updated last month
- ☆23Updated 3 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆42Updated last year
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 2 months ago