Resources for Influenza Research
☆24Aug 3, 2022Updated 3 years ago
Alternatives and similar repositories for res4flu
Users that are interested in res4flu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- phylogenetic analyses informed by deep mutational scanning data☆15Apr 5, 2026Updated 2 months ago
- R package to run BEAST2☆11Dec 8, 2025Updated 6 months ago
- My attempt at participating in some mutant form of Tidy Tuesday.☆12Dec 9, 2019Updated 6 years ago
- A R statistical software package for estimating attributable influenza morbidity & mortality☆14Jun 6, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecula…☆11Feb 19, 2026Updated 4 months ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- BEAST analysis backing effective linguistics☆12May 4, 2025Updated last year
- ☆22May 9, 2026Updated last month
- A fast C++ API for simulating the spread of epidemics on contact networks.☆41Nov 6, 2023Updated 2 years ago
- R package for statistical inference of spatiotemporal partially observed Markov processes☆12Dec 21, 2024Updated last year
- Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences…☆19Apr 15, 2026Updated 2 months ago
- Tools for visualizing and comparing data from vertebrate retinas☆14Jan 20, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- For all your cluster needs☆18Feb 3, 2023Updated 3 years ago
- Simulating virus evolution and epidemiology☆21Feb 22, 2022Updated 4 years ago
- MathIOmica is a Mathematica package for omics data analyses☆12Mar 30, 2026Updated 3 months ago
- ☆15May 1, 2025Updated last year
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 9 months ago
- R package to Retrieve U.S. Flu Season Data from the CDC FluView Portal (WHO & ILINet)☆57Aug 27, 2023Updated 2 years ago
- University of Cincinnati ggplot2 workshop☆10Apr 16, 2019Updated 7 years ago
- The Moving Epidemic Method R Package☆18Jun 8, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Multiplex Primer Design☆12May 3, 2020Updated 6 years ago
- Pathogen evolution, selection and immunity☆46Mar 5, 2024Updated 2 years ago
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13May 23, 2023Updated 3 years ago
- Shiny app providing estimates of future bed occupancy given recent admissions☆12Jul 2, 2020Updated 5 years ago
- Repository for the R for Epidemiology book☆30Dec 31, 2025Updated 6 months ago
- ☆12Oct 11, 2022Updated 3 years ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- Nextstrain build for avian influenza viruses☆28Updated this week
- Influenza genome analysis Nextflow workflow☆32Sep 15, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆14Mar 4, 2026Updated 3 months ago
- Publication and sharing with Jupyter notebooks for reproducible research☆10May 10, 2019Updated 7 years ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated last month
- Real-time tracking of influenza evolution☆91Sep 8, 2023Updated 2 years ago
- A site for sharing analyses of reportable disease data developed by the NYC DOHMH and promoting collaboration among public health practit…☆14May 12, 2025Updated last year
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆15May 15, 2025Updated last year