Alternatives and similar repositories for ncov-phylodynamics

Users that are interested in ncov-phylodynamics are comparing it to the libraries listed below

• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆63Updated 2 years ago
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆85Updated last year
• ukhsa-collaboration / variant_definitions
  ☆74Updated last year
• serratus-bio / tantalus
  R Data Exploration for Serratus
  ☆15Updated 2 years ago
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 3 months ago
• tgvaughan / MASTER
  A versatile simulation engine for stochastic population dynamics models.
  ☆22Updated 2 years ago
• cov-lineages / lineages
  Resources for calling and describing the circulating lineages of SARS-CoV-2
  ☆37Updated 4 years ago
• cov-lineages / scorpio
  serious constellations of reoccurring phylogenetically-independent origin
  ☆39Updated 2 years ago
• lonelyjoeparker / befi-bats-gui
  Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
  ☆12Updated 8 years ago
• cov-lineages / pangolin-data
  Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
  ☆32Updated last month
• santa-dev / santa-sim
  A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.
  ☆20Updated 2 years ago
• blab / global-migration
  Analysis of global migration patterns of seasonal influenza viruses
  ☆22Updated 6 years ago
• trvrb / dynamics-practical
  Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
  ☆32Updated 11 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated last month
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆48Updated 3 weeks ago
• sdwfrost / influenza-dynamics-practical-h5n1
  Inferring spatiotemporal dynamics of H5N1 influenza from sequence data
  ☆10Updated 12 years ago
• thednainus / Bayesian_tutorial
  Tutorial on Bayesian phylogenetic analysis
  ☆47Updated 8 years ago
• phylogeography / SPREADv1
  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics
  ☆20Updated 6 years ago
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆11Updated 4 years ago
• sdellicour / seraphim
  R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)
  ☆35Updated last month
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆57Updated 4 years ago
• W-L / ProblematicSites_SARS-CoV2
  ☆49Updated 3 years ago
• katholt / plotTree
  ☆67Updated 9 years ago
• rambaut / figtree.js
  Phylogenetic tree library for JavaScript/Node.js
  ☆36Updated 2 years ago
• WGS-standards-and-analysis / datasets
  Benchmark datasets for WGS analysis
  ☆39Updated 6 years ago
• benjaminhgood / LTEE-metagenomic
  Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli
  ☆22Updated 6 years ago
• emvolz-phylodynamics / treestructure
  ☆18Updated last week
• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆78Updated 2 months ago
• jts / ncov-tools
  Small collection of tools for performing quality control on coronavirus sequencing data and genomes
  ☆48Updated last year
• evogytis / baltic
  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…
  ☆112Updated last month