blab / ncov-phylodynamicsLinks
Phylodynamic estimation of nCoV incidence and prevalence
☆19Updated 5 years ago
Alternatives and similar repositories for ncov-phylodynamics
Users that are interested in ncov-phylodynamics are comparing it to the libraries listed below
Sorting:
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- R Data Exploration for Serratus☆15Updated 2 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 4 months ago
- ☆74Updated last year
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆37Updated 4 years ago
- A versatile simulation engine for stochastic population dynamics models.☆23Updated 2 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated 2 years ago
- ☆67Updated 9 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Updated 8 years ago
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆11Updated 10 months ago
- Tutorial on Bayesian phylogenetic analysis☆47Updated 8 years ago
- Phylogenetic tree library for JavaScript/Node.js☆36Updated 2 years ago
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆22Updated 6 years ago
- A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆20Updated 2 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 12 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- rhierbaps: R implementation of hierBAPS☆35Updated 4 years ago
- R We There Yet?☆31Updated 7 months ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 6 years ago
- Scalable relaxed clock phylogenetic dating☆27Updated 2 months ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 6 years ago
- map Illumina metagenomes to genomes!☆38Updated last month
- ☆25Updated 4 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Programmatically interact with the GISAID database.☆78Updated 2 months ago
- Robust Aitchison PCA from sparse count data☆36Updated 3 years ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆20Updated 5 months ago
- MicrobeDirectory 2.0☆22Updated 5 years ago