Alternatives and similar repositories for GenomicRanges

Users that are interested in GenomicRanges are comparing it to the libraries listed below

• gladkia / igvShiny
  An htmlwidget version of igv, for RStudio and Shiny apps
  ☆38Updated 3 months ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆46Updated last year
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆31Updated 5 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆40Updated last month
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆35Updated last week
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆23Updated 5 years ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆75Updated 2 years ago
• tgirke / systemPipeR
  Project Website:
  ☆54Updated 5 months ago
• hansenlab / minfi
  Devel repository for minfi
  ☆63Updated last year
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆44Updated 8 months ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆30Updated 11 months ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆38Updated last month
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last week
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆41Updated last year
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆79Updated 7 months ago
• Bioconductor / GenomicFeatures
  Query the gene models of a given organism/assembly
  ☆27Updated last month
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 5 years ago
• kdkorthauer / dmrseq
  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
  ☆61Updated 6 months ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• slowkow / homerkit
  Read HOMER motif analysis output in R.
  ☆17Updated 7 years ago
• Bioconductor / Rsamtools
  Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
  ☆28Updated last month
• Bioconductor / SummarizedExperiment
  A container (S4 class) for matrix-like assays
  ☆36Updated last month
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆14Updated last year
• btmonier / vidger
  Make rapid visualizations of RNA-seq data in R
  ☆19Updated 2 months ago
• rnabioco / valr
  Genome Interval Arithmetic in R
  ☆94Updated last month
• tidyomics / tidySummarizedExperiment
  Brings SummarizedExperiment to the tidyverse
  ☆29Updated 3 weeks ago
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆35Updated 7 years ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆31Updated last week