Representation and manipulation of genomic intervals
☆46Dec 8, 2025Updated 3 months ago
Alternatives and similar repositories for GenomicRanges
Users that are interested in GenomicRanges are comparing it to the libraries listed below
Sorting:
- Foundation of integer range manipulation in Bioconductor☆23Oct 30, 2025Updated 4 months ago
- A container (S4 class) for matrix-like assays☆36Feb 5, 2026Updated last month
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆28Mar 7, 2026Updated last week
- A unified framework for working transparently with on-disk and in-memory array-like datasets☆28Oct 30, 2025Updated 4 months ago
- Foundation of vector-like and list-like containers in Bioconductor☆17Oct 30, 2025Updated 4 months ago
- Efficient manipulation of biological strings☆66Mar 6, 2026Updated 2 weeks ago
- Query the gene models of a given organism/assembly☆27Oct 30, 2025Updated 4 months ago
- Utilities for manipulating chromosome names, including modifying them to follow a particular naming style☆33Dec 4, 2025Updated 3 months ago
- ☆12Oct 29, 2025Updated 4 months ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15Apr 16, 2025Updated 11 months ago
- ATACseqQC tutorials for BioC 2019 workshop☆19Jul 28, 2020Updated 5 years ago
- This repo contains tutorials for different NGS analysis methods☆13Nov 29, 2021Updated 4 years ago
- High-performance sparse data representation and manipulation in R☆11Mar 12, 2026Updated last week
- Bioconductor facilities for parallel evaluation☆69Oct 30, 2025Updated 4 months ago
- CRAN Package For Managing Bioconductor Packages☆75Nov 13, 2025Updated 4 months ago
- Pipeline for eukaryotic genome annotation based on external evidences☆14Feb 23, 2023Updated 3 years ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated last week
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- I often use some of the self-written programs.☆16Nov 13, 2025Updated 4 months ago
- S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects☆12Oct 30, 2025Updated 4 months ago
- R package 📦 for handy functions when working with GWAS (summary) data☆17Jul 29, 2019Updated 6 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 6 years ago
- ☆11Mar 1, 2025Updated last year
- Visualization of Functional Enrichment Result☆257Mar 2, 2026Updated 2 weeks ago
- Genomic Annotation in Livestock for positional candidate LOci☆13Feb 26, 2021Updated 5 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- Scripts for bioinformatics data processing and analysis☆12Nov 7, 2023Updated 2 years ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated last year
- 基因组组装注释流程及脚本☆16Feb 12, 2023Updated 3 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- False discovery rate regression☆10Nov 12, 2020Updated 5 years ago
- Data Wrangling and Processing for Genomics☆73Updated this week
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- R interface to genome annotation files and the UCSC genome browser☆36Dec 25, 2025Updated 2 months ago
- ☆17Nov 26, 2023Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Updated this week
- ☆10Feb 25, 2024Updated 2 years ago