Alternatives and similar repositories for GenomicRanges

Users that are interested in GenomicRanges are comparing it to the libraries listed below

• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆45Updated last month
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• gladkia / igvShiny
  An htmlwidget version of igv, for RStudio and Shiny apps
  ☆38Updated 4 months ago
• tgirke / systemPipeR
  Project Website:
  ☆54Updated 2 weeks ago
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆31Updated 5 years ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆24Updated 5 years ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆38Updated 2 months ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆40Updated 2 weeks ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last week
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 5 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆44Updated 10 months ago
• Bioconductor / GenomicFeatures
  Query the gene models of a given organism/assembly
  ☆27Updated 2 months ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆30Updated last year
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆76Updated 2 years ago
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆79Updated 9 months ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆42Updated last year
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆35Updated 7 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• hansenlab / minfi
  Devel repository for minfi
  ☆64Updated last year
• Bioconductor / Rsamtools
  Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
  ☆28Updated 2 months ago
• kdkorthauer / dmrseq
  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
  ☆62Updated 8 months ago
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆35Updated last month
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆14Updated last year
• btmonier / vidger
  Make rapid visualizations of RNA-seq data in R
  ☆19Updated 3 months ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• waldronlab / enrichOmics
  Functional enrichment analysis of high-throughput omics data
  ☆20Updated last year
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆115Updated 3 months ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆27Updated 3 months ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆84Updated 5 months ago