Alternatives and similar repositories for pathway-forte

Users that are interested in pathway-forte are comparing it to the libraries listed below

• IOR-Bioinformatics / PCSF
  ☆14Updated 6 years ago
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆20Updated last year
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• TomKellyGenetics / graphsim
  R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
  ☆24Updated 8 months ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆16Updated 4 years ago
• b2slab / FELLA
  FELLA: an R package for Metabolomics data enrichment through diffusion
  ☆22Updated 4 years ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• pmartR / pmartR
  The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…
  ☆48Updated 3 months ago
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆45Updated 5 months ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆28Updated 2 years ago
• Nextflow4Metabolomics / nextflow4ms-dial
  Nextflow-powered MS-DIAL
  ☆10Updated last year
• vpalombo / PANEV
  PaNeV: an R package for a pathway-based network visualization
  ☆10Updated 5 months ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 4 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 7 months ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆24Updated 9 months ago
• cwieder / PathIntegrate
  PathIntegrate Python package for pathway-based multi-omics data integration
  ☆18Updated last year
• datarail / gr_metrics
  ☆15Updated 2 years ago
• nasqar / ClusterProfShinyORA
  A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
  ☆12Updated 6 years ago
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆14Updated 9 months ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆45Updated last week
• YuLab-SMU / meshes
  MeSH Enrichment and Semantic analyses
  ☆12Updated last month
• SaccoPerfettoLab / SignalingProfiler
  SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.
  ☆15Updated 3 months ago
• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated last week
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆24Updated 7 months ago
• ebiwd / EBI-Icon-fonts
  A collection of functional and scientific icons for EMBL-EBI sites.
  ☆17Updated 5 years ago
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆24Updated 4 years ago
• ylaboratory / gene-embedding-benchmarks
  Benchmarking gene embeddings on single, paired, and gene set tasks
  ☆18Updated last month
• ncats / RaMP-DB
  ☆38Updated last week
• biswapriyamisra / metabolomics
  Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016
  ☆12Updated 5 years ago