pathwayforte / pathway-forteLinks
A Python package for benchmarking pathway database with functional enrichment and classification methods
☆13Updated 4 years ago
Alternatives and similar repositories for pathway-forte
Users that are interested in pathway-forte are comparing it to the libraries listed below
Sorting:
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 3 months ago
- Harmonizing pathway databases using Biological Expression Language (BEL)☆20Updated last year
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- ☆14Updated 6 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 4 months ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆21Updated 4 years ago
- MeSH Enrichment and Semantic analyses☆12Updated 4 months ago
- Nextflow-powered MS-DIAL☆10Updated 7 months ago
- A GenePattern module for running the ssGSEA method☆13Updated 5 months ago
- PaNeV: an R package for a pathway-based network visualization☆10Updated this week
- ☆35Updated this week
- The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…☆46Updated 3 weeks ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Updated 2 months ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆44Updated last month
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆23Updated 2 months ago
- Network annotation visualization☆18Updated 3 months ago
- A Python package for gene network analysis☆32Updated 3 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆25Updated 6 years ago
- An R package to query EBI's Ontology Lookup Service (OLS)☆11Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 7 months ago
- Network Visualization using both GUI and Programming☆29Updated 3 months ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆16Updated 9 months ago
- SODAR: System for Omics Data Access and Retrieval☆15Updated this week
- The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.☆33Updated 4 years ago