lens-biophotonics / ZetaStitcher
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
☆42Updated 7 months ago
Alternatives and similar repositories for ZetaStitcher:
Users that are interested in ZetaStitcher are comparing it to the libraries listed below
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 4 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆70Updated last week
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆56Updated last month
- ImgLib2/BDV implementation of Stitching for large datasets☆73Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆39Updated 5 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last week
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- ☆71Updated 3 weeks ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 2 weeks ago
- Easily read and write ome-tiff images in python☆27Updated 11 months ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆31Updated 2 weeks ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆33Updated 2 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated last week
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆75Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- Resources for teaching/preparing to teach bioimage analysis☆56Updated last week
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 6 months ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆54Updated 2 weeks ago
- Process images using SimpleITK in napari☆20Updated 6 months ago
- Automated mitochondrial segmentation and tracking.☆31Updated 3 years ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆59Updated last month
- Lattice light-sheet post-processing utility.☆28Updated last week
- StarDist plugin for napari☆38Updated 7 months ago