Alternatives and similar repositories for ZetaStitcher

Users that are interested in ZetaStitcher are comparing it to the libraries listed below

• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆56Updated 3 months ago
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆39Updated last month
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆73Updated this week
• VolkerH / Lattice_Lightsheet_Deskew_Deconv
  Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data
  ☆25Updated 4 years ago
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆61Updated 2 months ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 2 months ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 3 months ago
• juglab / N2V_fiji
  ☆21Updated 3 years ago
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated last month
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆74Updated last month
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• Ajaxels / MIB2
  Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…
  ☆32Updated 3 weeks ago
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆23Updated 6 months ago
• MultimodalImagingCenter / MiC
  MiC is an ImageJ plugin to compare segmentation masks
  ☆19Updated this week
• funkelab / linajea
  ☆18Updated 2 years ago
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆80Updated last week
• tlambert03 / LLSpy
  Lattice light-sheet post-processing utility.
  ☆29Updated this week
• peng-lab / BaSiCPy
  ☆81Updated 2 months ago
• adanog / MSSR
  MSSR Plugin
  ☆13Updated 7 months ago
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated 2 years ago
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆32Updated 3 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆56Updated last week
• QI2lab / OPM
  Archived: control, reconstruction, and analysis code for oblique plane microscopy.
  ☆22Updated 2 months ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆24Updated 4 years ago
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆30Updated 3 years ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆56Updated last week
• MicroscPSF / MicroscPSF-Py
  Fast and Accurate 3D PSF Computation for Fluorescence Microscopy
  ☆42Updated 7 months ago
• SebastienTs / LOBSTER
  Little OBjects Segmentation and Tracking EnviRonment
  ☆9Updated 4 years ago
• AiviaCommunity / 3D-RCAN
  Three-dimensional residual channel attention networks
  ☆52Updated 2 years ago