ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
☆47Nov 13, 2025Updated 11 months ago
Alternatives and similar repositories for ZetaStitcher
Users that are interested in ZetaStitcher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python module for accessing Hamamatsu DCIMG files☆14Oct 27, 2026Updated last week
- An open-source Python toolkit for large-scale fluorescence microscopy data alignment and fusion.☆11Jul 29, 2026Updated 3 months ago
- ☆24Sep 13, 2025Updated last year
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated 2 years ago
- ☆10Mar 20, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆36Oct 10, 2022Updated 4 years ago
- ☆23Mar 26, 2021Updated 5 years ago
- (Python3, PyQt5) GUI software to tile large images. Designed to image 96-well plates used in wet labs.☆12Jun 28, 2018Updated 8 years ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆94Mar 5, 2024Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Updated this week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Oct 29, 2026Updated last week
- GPU accelerated 3D image deconvolution using CUDA☆39Jul 18, 2024Updated 2 years ago
- Microscope image stitching☆49Apr 18, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 3 years ago
- Panoramic image generation from 2D microscope images☆20Jun 17, 2021Updated 5 years ago
- in situ PSF retrieval for whole cells and tissues☆11Jul 24, 2021Updated 5 years ago
- MIST-inspired microscope image stitching package☆83Jan 29, 2026Updated 9 months ago
- Distributed segmentation for bio-image-analysis☆43Jun 5, 2026Updated 5 months ago
- PSFj - Know your microscope fluorescence☆24Mar 6, 2020Updated 6 years ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆40Oct 8, 2026Updated 3 weeks ago
- PyFRAP: A Python based FRAP analysis tool box☆17Feb 1, 2026Updated 9 months ago
- ☆14Jan 25, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ilastik plugin for napari☆15Mar 2, 2026Updated 8 months ago
- ☆45Updated this week
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated 8 months ago
- Python tools for MoBIE☆10Jul 3, 2026Updated 4 months ago
- Real-time, interactive exploration of 3D image stacks☆13Nov 25, 2019Updated 6 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated 2 years ago
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆12Jun 15, 2026Updated 4 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- ☆22Aug 24, 2026Updated 2 months ago
- Workshop materials for "Images to Knowledge with ImageJ and Friends" 2018 conference☆11Jan 4, 2019Updated 7 years ago
- ☆61Updated this week
- ☆120Updated this week
- Tiktorch☆12May 7, 2026Updated 5 months ago