AndrewGYork / high_na_single_objective_lightsheetView external linksLinks
Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/high_na_single_objective_lightsheet
☆22Jun 21, 2024Updated last year
Alternatives and similar repositories for high_na_single_objective_lightsheet
Users that are interested in high_na_single_objective_lightsheet are comparing it to the libraries listed below
Sorting:
- Image acquisition software for mesoSPIM light-sheet microscopes.☆45Updated this week
- ☆30Jun 10, 2021Updated 4 years ago
- Generate markdown notebooks from ImageJ Macro☆26Mar 17, 2021Updated 4 years ago
- AutoPilot library☆15Nov 15, 2016Updated 9 years ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆54May 20, 2024Updated last year
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- ☆36Mar 22, 2024Updated last year
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 10 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆48Oct 28, 2025Updated 3 months ago
- ☆24Sep 13, 2025Updated 5 months ago
- Software for camera acquisition and tracking of particles☆11Nov 22, 2022Updated 3 years ago
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Sep 28, 2023Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated last year
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Rea…☆13Jun 22, 2024Updated last year
- Running compute-intense parts of BigStitcher distributed☆29Jan 30, 2026Updated 2 weeks ago
- ☆13Mar 10, 2020Updated 5 years ago
- Lattice light-sheet post-processing utility.☆30Feb 2, 2026Updated last week
- Recipes for open microscopy☆12Dec 7, 2020Updated 5 years ago
- SLM binary mask generator for Lattice Light Sheet microscopy☆12Dec 2, 2021Updated 4 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Sep 30, 2024Updated last year
- Master repository that documents how the different parts come together of the open source hardware Fluorescence Activated (Microfluidic) …☆15Dec 8, 2025Updated 2 months ago
- Python control of micro-manager for customized data acquisition☆178Aug 21, 2025Updated 5 months ago
- Various parts made for fluorescence microscopy + optics work☆16Jul 22, 2019Updated 6 years ago
- Visualization of fluorescent protein properties with d3.js. Obsolete.☆12Mar 12, 2024Updated last year
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆64Mar 12, 2025Updated 11 months ago
- rapidSTORM open-source localization microscopy software☆18Jul 6, 2018Updated 7 years ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆17Feb 6, 2026Updated last week
- Single-Molecule Localization Microscopy - Software Benchmarking - Challenge 2016☆18Jan 26, 2019Updated 7 years ago
- ilastik plugin for napari☆14Dec 15, 2025Updated last month
- Arduino-based microscope autofocus control☆15Sep 18, 2023Updated 2 years ago
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- ImageJ convenience layer for N5☆19Feb 4, 2026Updated last week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated last month
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 2 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago