Alternatives and similar repositories for MetabolomicsTools

Users that are interested in MetabolomicsTools are comparing it to the libraries listed below

• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆43Updated last year
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆48Updated 2 years ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆27Updated 2 years ago
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆25Updated last month
• shuzhao-li-lab / asari
  asari, metabolomics data preprocessing
  ☆55Updated 3 weeks ago
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆30Updated 2 years ago
• eMetaboHUB / MS-CleanR
  ☆26Updated last year
• jessegmeyerlab / proteomics-tutorial
  ☆66Updated last year
• ZhuMSLab / DecoMetDIA
  ☆12Updated 3 years ago
• rickhelmus / patRoon
  Workflow solutions for mass-spectrometry based non-target analysis.
  ☆68Updated this week
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆12Updated 4 years ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆30Updated last year
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆20Updated last year
• zhengfj1994 / MetEx
  MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.
  ☆18Updated 2 years ago
• CompOmics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 4 years ago
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆26Updated 2 weeks ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆93Updated last year
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆23Updated 5 months ago
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆81Updated 3 weeks ago
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• cbroeckl / RAMClustR
  Assigning precursor-product ion relationships in indiscriminant MS/MS data
  ☆13Updated last week
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆98Updated last month
• CCMS-UCSD / GNPS_Workflows
  Public Workflows at GNPS
  ☆64Updated last year
• xia-lab / MetaboAnalyst_Docker
  Docker for MetaboAnalyst 4.0
  ☆24Updated 5 years ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆48Updated 8 months ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 6 years ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated last month
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆57Updated 4 months ago
• CompOmics / peptide-shaker
  Interpretation of proteomics identification results
  ☆52Updated 3 months ago