Algorithm for secondary de novo genome assembly guided by closely related references
☆167Feb 4, 2020Updated 6 years ago
Alternatives and similar repositories for AlignGraph
Users that are interested in AlignGraph are comparing it to the libraries listed below
Sorting:
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- High-performance error correction for Illumina resequencing data☆74May 31, 2016Updated 9 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Mar 31, 2015Updated 10 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Oct 2, 2024Updated last year
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆20Oct 8, 2021Updated 4 years ago
- De novo genome assembly and multisample variant calling☆112Mar 28, 2019Updated 6 years ago
- Chromosome-level scaffolding using multiple references☆164Sep 8, 2024Updated last year
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Feb 17, 2021Updated 5 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated last month
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago
- Fast and memory-efficient sequencing error corrector☆94Jan 4, 2026Updated last month
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Apr 1, 2025Updated 10 months ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- parallelized blat with multi-threads support☆56Jan 23, 2025Updated last year
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Sep 5, 2017Updated 8 years ago
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated last week
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 2 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 3 months ago
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 2 years ago