marissaweis / ssl_neuronLinks
Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"
☆13Updated last year
Alternatives and similar repositories for ssl_neuron
Users that are interested in ssl_neuron are comparing it to the libraries listed below
Sorting:
- 🌈☆62Updated 6 months ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆179Updated this week
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆37Updated last year
- MorphoFeatures code and data☆22Updated 2 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆19Updated 4 months ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆37Updated last month
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 3 weeks ago
- ☆44Updated last week
- Read and write Neuroglancer datasets programmatically.☆159Updated this week
- ☆27Updated last week
- [Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data☆36Updated 6 months ago
- Easy Volumetric Segmentation with Deep Learning☆27Updated 3 weeks ago
- Block-wise task scheduling for large nD volumes.☆32Updated 6 months ago
- Multi-Object Tracker using Integer Linear Equations☆38Updated last week
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 months ago
- ☆14Updated last year
- ☆12Updated last month
- Transformer-based cell tracking for live-cell microscopy☆95Updated this week
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆32Updated 2 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆54Updated this week
- Tensorflow and Pytorch Version of Malis Loss☆17Updated 4 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Updated 2 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆15Updated last month
- Pipeline for putting surface meshes into correspondence☆26Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆128Updated last week
- Command line tool for registration of very large 3D volumes.☆14Updated last year
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆103Updated 2 months ago
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆12Updated 2 months ago
- 3D shape analysis using deep learning☆28Updated this week
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆24Updated 3 weeks ago