Alternatives and similar repositories for ssl_neuron

Users that are interested in ssl_neuron are comparing it to the libraries listed below

• funkelab / lsd
  🌈
  ☆60Updated 5 months ago
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆19Updated 3 months ago
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆36Updated last month
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆179Updated 2 months ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆25Updated 9 months ago
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆37Updated last year
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆29Updated 2 years ago
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆83Updated 2 weeks ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆58Updated last month
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆37Updated last week
• GuillaumeMougeot / biom3d
  Easy Volumetric Segmentation with Deep Learning
  ☆27Updated this week
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆156Updated 2 weeks ago
• Sentinal4D / cellshape
  3D shape analysis using deep learning
  ☆26Updated last year
• AllenCellModeling / cyto-dl
  ☆27Updated last week
• ashapsoncoe / h01
  ☆14Updated last year
• jmhb0 / o2vae
  [Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data
  ☆35Updated 5 months ago
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆31Updated last month
• neel-dey / AnyStar
  [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentation
  ☆16Updated last year
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆32Updated 5 months ago
• google-research / connectomics
  ☆44Updated 3 weeks ago
• jakobtroidl / neuron-shape-reasoning
  PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers
  ☆12Updated last month
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated 2 weeks ago
• JackieZhai / awesome-vem-datasets
  Open source volume electron microscopy (vEM) datasets for connectomics.
  ☆14Updated 9 months ago
• HelmholtzAI-Consultants-Munich / Malis-Loss
  Tensorflow and Pytorch Version of Malis Loss
  ☆17Updated 4 years ago
• bowang-lab / MAESTER
  Masked Autoencoder Guided Segmentation at Pixel Resolution
  ☆15Updated last year
• CAREamics / careamics
  A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…
  ☆98Updated this week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆52Updated this week
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆14Updated last year
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆18Updated 5 months ago