Alternatives and similar repositories for ssl_neuron

Users that are interested in ssl_neuron are comparing it to the libraries listed below

• funkelab / lsd
  🌈
  ☆67Updated 4 months ago
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆21Updated 2 weeks ago
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆39Updated last week
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆39Updated last year
• PytorchConnectomics / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆188Updated this week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆22Updated 2 years ago
• google-research / connectomics
  ☆48Updated 2 weeks ago
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆35Updated 2 months ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆33Updated 10 months ago
• seung-lab / microviewer
  Multiplatform 3D numpy image browser based viewer with voxel painting.
  ☆16Updated 2 months ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆60Updated last month
• JackieZhai / awesome-vem-datasets
  Open source volume electron microscopy (vEM) datasets for connectomics.
  ☆15Updated last year
• jmhb0 / o2vae
  [Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data
  ☆38Updated 10 months ago
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆38Updated last month
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆171Updated last week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆65Updated 3 weeks ago
• jakobtroidl / neuron-shape-reasoning
  PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers
  ☆12Updated 6 months ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆27Updated 4 months ago
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆15Updated 2 weeks ago
• funkelab / synister
  Neurotransmitter prediction from EM.
  ☆16Updated 11 months ago
• Levishery / connectomic-paper-datasets
  Collection of connectomic papers and datasets.
  ☆16Updated 2 years ago
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆29Updated 3 years ago
• uhlmanngroup / muMatch
  Pipeline for putting surface meshes into correspondence
  ☆26Updated 3 years ago
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆123Updated last week
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆16Updated 3 years ago
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆114Updated 4 months ago
• GuillaumeMougeot / biom3d
  Easy Volumetric Segmentation with Deep Learning
  ☆28Updated 2 weeks ago
• CAVEconnectome / nglui
  ☆13Updated 3 months ago
• ashapsoncoe / h01
  ☆14Updated last year
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆21Updated 2 weeks ago