Alternatives and similar repositories for CREST:

Users that are interested in CREST are comparing it to the libraries listed below

• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆12Updated last week
• ashapsoncoe / h01
  ☆14Updated last year
• funkelab / lsd
  🌈
  ☆54Updated 3 weeks ago
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆16Updated this week
• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆13Updated 2 weeks ago
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆37Updated 10 months ago
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated 2 weeks ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 5 months ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 9 months ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆30Updated 3 weeks ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆47Updated this week
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆26Updated last week
• marissaweis / ssl_neuron
  Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"
  ☆11Updated last year
• AllenInstitute / asap-modules
  Shared repo for EM connectomics and Array Tomography render based image processing modules
  ☆14Updated last month
• CAVEconnectome / MeshParty
  ☆36Updated 3 weeks ago
• google-research / sofima
  Scalable Optical Flow-based Image Montaging and Alignment
  ☆68Updated 2 months ago
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆14Updated last year
• JaneliaSciComp / SharkViewer
  SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.
  ☆24Updated 2 years ago
• JaneliaSciComp / VVDViewer
  3D/4D volumetric rendering of microscopy data
  ☆23Updated 2 months ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆38Updated last year
• oanegros / Blender_for_Biologists_2023
  ☆38Updated 9 months ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆82Updated 2 weeks ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 4 years ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 3 years ago
• CAVEconnectome / nglui
  ☆11Updated 3 weeks ago
• connectome-neuprint / neuVid
  Generates neuroscience videos from high-level descriptions using Blender or VVDViewer.
  ☆33Updated 3 months ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆54Updated this week
• connectome-neuprint / neuPrintExplorer
  View connectomic data stored in neuPrint
  ☆25Updated last week
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆44Updated last year