Alternatives and similar repositories for CREST

Users that are interested in CREST are comparing it to the libraries listed below

• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆17Updated 3 weeks ago
• ashapsoncoe / h01
  ☆14Updated last year
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆29Updated this week
• funkelab / lsd
  🌈
  ☆56Updated 2 months ago
• marissaweis / ssl_neuron
  Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"
  ☆12Updated last year
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated last week
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆16Updated this week
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆37Updated last year
• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆13Updated last month
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 6 months ago
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆14Updated last year
• JaneliaSciComp / SharkViewer
  SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.
  ☆24Updated 2 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆49Updated this week
• CAVEconnectome / MeshParty
  ☆36Updated 2 months ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 11 months ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆30Updated 2 months ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 2 years ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆23Updated last week
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆153Updated this week
• AllenInstitute / asap-modules
  Shared repo for EM connectomics and Array Tomography render based image processing modules
  ☆15Updated 2 months ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated last month
• CAVEconnectome / nglui
  ☆12Updated 2 weeks ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆120Updated this week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• BigNeuron / Data
  ☆16Updated 8 years ago
• Levishery / connectomic-paper-datasets
  Collection of connectomic papers and datasets.
  ☆15Updated last year
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆15Updated last month
• betaseg / cellsketch
  ☆10Updated last year
• google-research / sofima
  Scalable Optical Flow-based Image Montaging and Alignment
  ☆74Updated 3 months ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆56Updated 2 weeks ago