ashapsoncoe / CREST
Connectome Reconstruction and Exploration Simple Tool
☆18Updated last year
Alternatives and similar repositories for CREST
Users that are interested in CREST are comparing it to the libraries listed below
Sorting:
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆15Updated this week
- ☆14Updated last year
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆16Updated this week
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆28Updated last week
- 🌈☆55Updated last month
- Block-wise task scheduling for large nD volumes.☆30Updated last month
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆12Updated last year
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆13Updated last month
- ☆36Updated last month
- SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.☆24Updated 2 years ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated this week
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆37Updated 11 months ago
- Scalable Optical Flow-based Image Montaging and Alignment☆72Updated 2 months ago
- Tools for distributed alignment of massive images☆81Updated last month
- A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.☆14Updated 8 months ago
- MorphoFeatures code and data☆21Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆22Updated 6 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- Command line tool for registration of very large 3D volumes.☆14Updated last year
- ☆45Updated 4 years ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆12Updated 3 weeks ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 10 months ago
- Shared repo for EM connectomics and Array Tomography render based image processing modules☆15Updated last month
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆33Updated this week
- Collection of connectomic papers and datasets.☆15Updated last year
- 3D/4D volumetric rendering of microscopy data☆23Updated last week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆23Updated 2 weeks ago
- Multi-Object Tracker using Integer Linear Equations☆30Updated last month
- View connectomic data stored in neuPrint☆25Updated last week