Connectome Reconstruction and Exploration Simple Tool
☆22Jan 29, 2024Updated 2 years ago
Alternatives and similar repositories for CREST
Users that are interested in CREST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Mar 26, 2024Updated 2 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆29Feb 24, 2026Updated 8 months ago
- ☆68Oct 20, 2026Updated last week
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆11Feb 9, 2021Updated 5 years ago
- SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.☆25Jan 8, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Volumetric data viewer in Jupyter notebooks with HoloViz Panel and Neuroglancer☆13Feb 4, 2025Updated last year
- ☆16Nov 2, 2016Updated 9 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated 6 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Oct 21, 2026Updated last week
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆18Apr 5, 2024Updated 2 years ago
- ☆43Sep 1, 2025Updated last year
- Collection of connectomic papers and datasets.☆16Dec 25, 2023Updated 2 years ago
- Read and write Neuroglancer datasets programmatically.☆176Updated this week
- A tool for proofreading and refining synaptic polarity annotations in electron microscopy volumes.☆11Oct 7, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- WebGL-based viewer for volumetric data☆25Updated this week
- Python Connectome Toolbox☆11Dec 15, 2010Updated 15 years ago
- Comprehensive platform for automated large-scale connectomics. Segmentation and Detection models built upon Funke lab's algorithms.☆14Oct 9, 2026Updated 3 weeks ago
- Provides instructions and Docker configurations for accessing the microns_phase3_nda schema and/or an isolated database container.☆12Jun 29, 2023Updated 3 years ago
- ☆26Oct 12, 2026Updated 2 weeks ago
- Conversion of neuroimaging data for display in Neuroglancer☆31Aug 19, 2026Updated 2 months ago
- Block-wise task scheduling for large nD volumes.☆34Updated this week
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆16Apr 13, 2019Updated 7 years ago
- Tools for motion correcting, compressing, demixing and visualizing single cell functional imaging data☆20Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆28Oct 15, 2026Updated 2 weeks ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆76Aug 25, 2026Updated 2 months ago
- A powerful and fast set of tools for loading data, filtering, processing, working with data formats, and basic utilities for electrophysi…☆11Sep 28, 2026Updated last month
- Simple watershed and agglomeration library for affinity graphs.☆31Oct 6, 2026Updated 3 weeks ago
- ☆13Sep 23, 2026Updated last month
- A mouse brain histology tool for neuroscientists.☆13Feb 16, 2026Updated 8 months ago
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆44May 30, 2024Updated 2 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 5 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆69Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LED Analysis Wizard☆11Mar 20, 2026Updated 7 months ago
- Plugin for continuous conformational flexibility analysis containing HEMNMA, StructMap, HEMNMA-3D, TomoFlow, NMMD, and DeepHEMNMA for in …☆10May 19, 2026Updated 5 months ago
- View connectomic data stored in neuPrint☆50Oct 6, 2026Updated 3 weeks ago
- ☆12Mar 25, 2022Updated 4 years ago
- [ICLR 2025] Code for the PopulationTransformer☆20Sep 14, 2026Updated last month
- Scalable Optical Flow-based Image Montaging and Alignment☆103Oct 5, 2026Updated 3 weeks ago
- ☆12Jun 17, 2026Updated 4 months ago