Connectome Reconstruction and Exploration Simple Tool
☆21Jan 29, 2024Updated 2 years ago
Alternatives and similar repositories for CREST
Users that are interested in CREST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Mar 26, 2024Updated 2 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆27Feb 24, 2026Updated 4 months ago
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆18Apr 5, 2024Updated 2 years ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Jun 25, 2026Updated last week
- SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.☆24Jan 8, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Collection of connectomic papers and datasets.☆16Dec 25, 2023Updated 2 years ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆24May 21, 2026Updated last month
- WebGL-based viewer for volumetric data☆25Jun 12, 2026Updated 2 weeks ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆37Jun 18, 2026Updated 2 weeks ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆16Apr 13, 2019Updated 7 years ago
- Read and write Neuroglancer datasets programmatically.☆174Jun 4, 2026Updated 3 weeks ago
- View connectomic data stored in neuPrint☆28Jun 8, 2026Updated 3 weeks ago
- Conversion of neuroimaging data for display in Neuroglancer☆31Sep 16, 2025Updated 9 months ago
- Block-wise task scheduling for large nD volumes.☆32May 4, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The source code for "MG-BERT: Multi-Graph Augmented BERT for Masked Language Modeling" paper (NAACL 2021, TextGraphs-15).☆12Jun 11, 2021Updated 5 years ago
- ☆15Jun 18, 2024Updated 2 years ago
- Python client utilties for interacting with the neuPrint connectome analysis service☆38May 23, 2026Updated last month
- ☆13Jun 17, 2026Updated 2 weeks ago
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated 11 months ago
- Code for OGB competition☆12Feb 24, 2024Updated 2 years ago
- Converts Dynamo tables to star files for coordinate import into RELION 4.0☆14Jul 25, 2023Updated 2 years ago
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆42May 30, 2024Updated 2 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ELViM is a method for visualizing the energy landscapes of biomolecules simulations.☆14Aug 18, 2025Updated 10 months ago
- Scalable Optical Flow-based Image Montaging and Alignment☆96Mar 2, 2026Updated 4 months ago
- ☆12Mar 25, 2022Updated 4 years ago
- ☆12Apr 4, 2023Updated 3 years ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15May 6, 2026Updated last month
- DynamiSpectra: Decode molecular motion with precision and power☆22Sep 16, 2025Updated 9 months ago
- Distributed, Versioned, Image-oriented Dataservice☆202Jun 22, 2026Updated last week
- QC and cell type assignment for patch-seq transcriptomics data☆25May 3, 2024Updated 2 years ago
- Transformer And Rapid Dimensionless Instance Segmentation☆23May 30, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆13Sep 7, 2021Updated 4 years ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆73May 18, 2026Updated last month
- Package for computing multiparameter persistence summaries☆10Oct 27, 2023Updated 2 years ago
- A deep neural network with hybrid architecture (EGNN + Transformer) for molecular properties prediction.☆23Dec 9, 2023Updated 2 years ago
- Handeye calibration using ICP method in UR robot☆15Feb 15, 2025Updated last year
- Utility functions for large-scale bio-image analysis.☆64Jun 3, 2026Updated 3 weeks ago
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated 5 months ago