Levishery / connectomic-paper-datasets
Collection of connectomic papers and datasets.
☆15Updated last year
Alternatives and similar repositories for connectomic-paper-datasets:
Users that are interested in connectomic-paper-datasets are comparing it to the libraries listed below
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆12Updated last week
- Simple watershed and agglomeration library for affinity graphs.☆22Updated 5 months ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆29Updated this week
- Open source volume electron microscopy (vEM) datasets for connectomics.☆13Updated 5 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated 3 weeks ago
- 🌈☆54Updated 3 weeks ago
- Command line tool for registration of very large 3D volumes.☆13Updated last year
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆16Updated this week
- ☆20Updated 4 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆13Updated last week
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆11Updated last year
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆12Updated last year
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆24Updated 2 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆179Updated 2 months ago
- Multi-Object Tracker using Integer Linear Equations☆30Updated 3 weeks ago
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Mo…☆12Updated 2 months ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 3 weeks ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆12Updated 3 years ago
- ☆14Updated last year
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆93Updated this week
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆10Updated 4 years ago
- Distributed segmentation for bio-image-analysis☆37Updated 2 weeks ago
- Course and exercises on deep learning for microscopy image analysis☆16Updated last year
- ☆36Updated 3 weeks ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- ☆18Updated 7 years ago
- flyem python library for synapse/object detection☆7Updated 6 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆12Updated 6 years ago