Alternatives and similar repositories for connectomic-paper-datasets

Users that are interested in connectomic-paper-datasets are comparing it to the libraries listed below

• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• JackieZhai / awesome-vem-datasets
  Open source volume electron microscopy (vEM) datasets for connectomics.
  ☆13Updated 6 months ago
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆15Updated this week
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 6 months ago
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆16Updated this week
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆33Updated this week
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆14Updated last year
• MancaZerovnikMekuc / UroCell
  Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…
  ☆12Updated 2 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆55Updated this week
• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 4 years ago
• funkelab / lsd
  🌈
  ☆55Updated last month
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆15Updated last month
• Rhoana / biologicalgraphs
  Biologically-Constrained Graphs for Global Connectomics Reconstruction
  ☆10Updated 4 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• ashapsoncoe / h01
  ☆14Updated last year
• marissaweis / ssl_neuron
  Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"
  ☆12Updated last year
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆30Updated last month
• constantinpape / affogato
  Affinity based segmentation algorithms and tools
  ☆10Updated this week
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆182Updated 3 months ago
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated 2 years ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• divelab / deepem3d
  ☆17Updated 7 years ago
• CAVEconnectome / MeshParty
  ☆36Updated last month
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆17Updated last month
• subeeshvasu / Awesome-Neuron-Segmentation-in-EM-Images
  A curated list of resources for 3D segmentation of neurites in EM images
  ☆49Updated last year
• computational-cell-analytics / dl-for-micro
  Course and exercises on deep learning for microscopy image analysis
  ☆16Updated last year
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated this week
• yanchaoz / SegNeuron
  Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Mo…
  ☆12Updated 3 months ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆48Updated 3 weeks ago
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆24Updated 2 years ago