Levishery / connectomic-paper-datasetsLinks
Collection of connectomic papers and datasets.
☆16Updated last year
Alternatives and similar repositories for connectomic-paper-datasets
Users that are interested in connectomic-paper-datasets are comparing it to the libraries listed below
Sorting:
- Open source volume electron microscopy (vEM) datasets for connectomics.☆14Updated 10 months ago
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 2 weeks ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆37Updated last month
- Command line tool for registration of very large 3D volumes.☆14Updated last year
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆19Updated 4 months ago
- Deep Learning for EM Connectomics☆15Updated 3 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 months ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆179Updated this week
- 🌈☆62Updated 6 months ago
- ☆21Updated 4 years ago
- A curated list of resources for 3D segmentation of neurites in EM images☆55Updated last year
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Updated 2 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated last month
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆18Updated this week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆54Updated this week
- Multi-Object Tracker using Integer Linear Equations☆38Updated last week
- ☆17Updated 7 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆15Updated last month
- Tensorflow and Pytorch Version of Malis Loss☆17Updated 4 years ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆170Updated this week
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆128Updated last week
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆12Updated 2 years ago
- Transformer-based cell tracking for live-cell microscopy☆95Updated this week
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆13Updated last year
- Affinity based segmentation algorithms and tools☆10Updated 4 months ago
- MorphoFeatures code and data☆22Updated 2 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆13Updated 6 years ago
- ☆10Updated last year