Alternatives and similar repositories for MicronsBinder

Users that are interested in MicronsBinder are comparing it to the libraries listed below

• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• CAVEconnectome / nglui
  ☆13Updated 2 weeks ago
• berenslab / MorphoPy
  A Python package for feature extraction of neural morphologies
  ☆43Updated last month
• yu-lab-vt / AQuA2
  Activity Quantification and Analysis for molecular spatiotemporal signals
  ☆30Updated 2 months ago
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆44Updated 3 months ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆20Updated 2 weeks ago
• nel-lab / FIOLA
  ☆34Updated 6 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆156Updated last month
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆139Updated 2 weeks ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆32Updated 7 months ago
• connectome-neuprint / neuprint-python
  Python client utilties for interacting with the neuPrint connectome analysis service
  ☆36Updated 2 months ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆20Updated 7 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆35Updated 2 weeks ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆219Updated 2 weeks ago
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆101Updated 9 months ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆89Updated 2 months ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆47Updated 2 years ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated this week
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆107Updated last month
• BlueBrain / NeuroM
  Neuronal Morphology Analysis Tool
  ☆108Updated 8 months ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆57Updated 3 weeks ago
• AllenInstitute / patchseqtools
  QC and cell type assignment for patch-seq transcriptomics data
  ☆23Updated last year
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆165Updated 2 weeks ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆38Updated last year
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆165Updated last week
• brainglobe / brainrender_paper
  Code for recreating the figures in the brainrender paper (Claudi et al. 2020)
  ☆12Updated 4 years ago