Alternatives and similar repositories for MicronsBinder

Users that are interested in MicronsBinder are comparing it to the libraries listed below

• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• CAVEconnectome / nglui
  ☆12Updated last week
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• berenslab / MorphoPy
  ☆42Updated last month
• yu-lab-vt / AQuA2
  Activity Quantification and Analysis for molecular spatiotemporal signals
  ☆27Updated 3 months ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆38Updated last month
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆84Updated 3 weeks ago
• connectome-neuprint / neuprint-python
  Python client utilties for interacting with the neuPrint connectome analysis service
  ☆34Updated this week
• adamshch / SEUDO
  ☆8Updated 3 years ago
• brainglobe / brainrender_paper
  Code for recreating the figures in the brainrender paper (Claudi et al. 2020)
  ☆12Updated 4 years ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 3 weeks ago
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆30Updated this week
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• AllenInstitute / patchseqtools
  QC and cell type assignment for patch-seq transcriptomics data
  ☆20Updated last year
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆18Updated last month
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated last year
• nel-lab / FIOLA
  ☆34Updated last month
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆154Updated this week
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆147Updated last month
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆50Updated last week
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆96Updated last week
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆19Updated 2 months ago
• funkelab / lsd
  🌈
  ☆59Updated 3 months ago
• itsasimiqbal / DeNeRD
  High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning
  ☆17Updated 3 years ago
• MouseLand / receptivefield-explorer
  GUI to compute and explore receptive fields, primarily from calcium imaging recordings
  ☆13Updated 4 years ago
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆155Updated this week
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆134Updated last week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆38Updated last year