AllenInstitute / MicronsBinder
A collection of notebooks to provide examples of using Microns-explorer.org datasets
☆34Updated 9 months ago
Alternatives and similar repositories for MicronsBinder:
Users that are interested in MicronsBinder are comparing it to the libraries listed below
- ☆10Updated last month
- Tools for working with single-neuron morphological reconstructions☆21Updated 10 months ago
- Python client utilties for interacting with the neuPrint connectome analysis service☆32Updated last month
- Block-wise task scheduling for large nD volumes.☆30Updated this week
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated this week
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆26Updated this week
- ☆45Updated 4 years ago
- 🌈☆54Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Tools for distributed alignment of massive images☆81Updated last month
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 8 months ago
- ☆36Updated 2 weeks ago
- MorphoFeatures code and data☆20Updated last year
- ☆37Updated 8 months ago
- ☆34Updated last year
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆9Updated this week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆47Updated this week
- ☆18Updated 3 years ago
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆10Updated 11 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 10 months ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆13Updated this week
- High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning☆17Updated 3 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆16Updated last week
- 3D/4D volumetric rendering of microscopy data☆22Updated last month
- A python package for the topological analysis of neurons.☆29Updated 3 weeks ago
- Segmentation of anatomical structures in a common coordinate space☆30Updated 3 weeks ago
- A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.☆14Updated 6 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆39Updated this week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 4 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆48Updated last year