JaneliaSciComp / SharkViewer
SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.
☆24Updated last year
Related projects: ⓘ
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆43Updated this week
- ☆45Updated 4 years ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆22Updated last week
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆105Updated last week
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆10Updated last month
- ☆10Updated 3 weeks ago
- Tools for distributed alignment of massive images☆74Updated last month
- ☆34Updated this week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated 9 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 3 years ago
- A python package for the topological analysis of neurons.☆27Updated 2 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆49Updated 4 years ago
- www.vaa3d.org☆78Updated 6 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆29Updated last year
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆119Updated 2 weeks ago
- WebGL-based viewer for volumetric data☆22Updated 2 weeks ago
- 3D/4D volumetric rendering of microscopy data☆17Updated 3 weeks ago
- Binary releases of Vaa3D and related software components☆42Updated 10 months ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆13Updated last month
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆39Updated 2 months ago
- Read and write Neuroglancer datasets programmatically.☆130Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆76Updated 2 weeks ago
- ☆16Updated 2 years ago
- Software package for neuron reconstruction and visualization☆38Updated 5 months ago
- ☆14Updated last year
- TREES toolbox☆26Updated this week
- Python client utilties for interacting with the neuPrint connectome analysis service☆31Updated last week
- MorphoFeatures code and data☆18Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆45Updated last week