Alternatives and similar repositories for SharkViewer:

Users that are interested in SharkViewer are comparing it to the libraries listed below

• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆45Updated this week
• CAVEconnectome / nglui
  ☆10Updated this week
• CAVEconnectome / MeshParty
  ☆35Updated 2 months ago
• BlueBrain / TMD
  A python package for the topological analysis of neurons.
  ☆29Updated 2 months ago
• cuntzlab / treestoolbox
  TREES toolbox
  ☆27Updated 4 months ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆38Updated 9 months ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆23Updated this week
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆119Updated last week
• albert597 / TRAILMAP
  ☆45Updated 4 years ago
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated this week
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆40Updated 6 months ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆79Updated 2 weeks ago
• JaneliaSciComp / VVDViewer
  3D/4D volumetric rendering of microscopy data
  ☆21Updated last month
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆25Updated this week
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆9Updated 3 weeks ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆52Updated 4 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 3 years ago
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆14Updated this week
• natverse / natverse
  Umbrella package to help install/load nat packages
  ☆10Updated 3 years ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆140Updated this week
• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆13Updated 5 months ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆129Updated this week
• BigNeuron / Data
  ☆16Updated 8 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆29Updated 3 months ago
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆79Updated 6 years ago
• bkntr / brainways
  Brainways
  ☆14Updated 2 weeks ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆44Updated last week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆81Updated last month