Alternatives and similar repositories for SharkViewer

Users that are interested in SharkViewer are comparing it to the libraries listed below

• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆49Updated 2 weeks ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆120Updated this week
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆17Updated 3 weeks ago
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• CAVEconnectome / nglui
  ☆12Updated 2 weeks ago
• cuntzlab / treestoolbox
  TREES toolbox
  ☆28Updated last month
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated last month
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated last week
• BlueBrain / TMD
  A python package for the topological analysis of neurons.
  ☆28Updated 3 months ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆23Updated last week
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆16Updated last week
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 4 years ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago
• CAVEconnectome / MeshParty
  ☆36Updated 2 months ago
• ashapsoncoe / h01
  ☆14Updated last year
• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆13Updated last month
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆134Updated last week
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 11 months ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆49Updated this week
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆44Updated last year
• JaneliaSciComp / VVDViewer
  3D/4D volumetric rendering of microscopy data
  ☆23Updated last month
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆96Updated last month
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆14Updated 2 years ago
• natverse / natverse
  Umbrella package to help install/load nat packages
  ☆11Updated 3 years ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆38Updated last week
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 2 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆30Updated 2 months ago
• funkelab / lsd
  🌈
  ☆56Updated 2 months ago