JaneliaSciComp / SharkViewerLinks
SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.
☆24Updated 2 years ago
Alternatives and similar repositories for SharkViewer
Users that are interested in SharkViewer are comparing it to the libraries listed below
Sorting:
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆62Updated last week
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 4 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆26Updated 3 weeks ago
- Read and write Neuroglancer datasets programmatically.☆168Updated this week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆19Updated last month
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆130Updated 2 weeks ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆21Updated 7 months ago
- A python package for the topological analysis of neurons.☆28Updated 9 months ago
- WebGL-based viewer for volumetric data☆24Updated this week
- ☆39Updated 3 months ago
- ☆13Updated last month
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆20Updated last week
- ☆14Updated last year
- Tools for distributed alignment of massive images☆89Updated last week
- www.vaa3d.org☆113Updated last year
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- Biomedisa is a free and open-source application for segmenting 3D images such as CT and MRI scans, developed at The Australian National U…☆56Updated this week
- Version 2 of the minc-toolkit, uses tools based on ITK version 4.x☆53Updated 6 months ago
- Software package for neuron reconstruction and visualization☆40Updated 6 months ago
- www.vaa3d.org☆80Updated 7 years ago
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Updated 5 months ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆57Updated 5 months ago
- ☆45Updated 5 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆140Updated last week
- Command line tool for registration of very large 3D volumes.☆15Updated 2 years ago
- Simple pure-python module for reading and writing nrrd files.☆124Updated 10 months ago
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆38Updated last year
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- Block-wise task scheduling for large nD volumes.☆32Updated 8 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago