GSEA-MSigDB / gsea-desktopLinks
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes).
☆38Updated 8 months ago
Alternatives and similar repositories for gsea-desktop
Users that are interested in gsea-desktop are comparing it to the libraries listed below
Sorting:
- Differential ATAC-seq toolkit☆27Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 3 weeks ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆29Updated 10 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Analysis for svaseq paper☆20Updated 11 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Visual exploratory analysis of gene expression data☆43Updated last week
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Statistical power studies for multi-omics experiments.☆32Updated 10 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 6 months ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Create QC and summary reports for Alevin output☆31Updated 2 weeks ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 3 years ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- ☆17Updated last year
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆22Updated 5 years ago