Alternatives and similar repositories for UniLanguage

Users that are interested in UniLanguage are comparing it to the libraries listed below

• aedera / anc2vec
  Unsupervised neural network for learning embeddings of GO terms.
  ☆19Updated 3 years ago
• yarongef / DistilProtBert
  DistilProtBert implementation, a distilled version of ProtBert model.
  ☆15Updated 3 years ago
• stamakro / GCN-for-Structure-and-Function
  Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
  ☆41Updated 2 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 4 years ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• Rostlab / goPredSim
  ☆49Updated last year
• MarkusWenzel / xai-proteins
  Insights into the inner workings of transformer models for protein function prediction
  ☆14Updated last year
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• songlab-cal / mogwai
  ☆25Updated 3 years ago
• nstrodt / UDSMProt
  Protein sequence classification with self-supervised pretraining
  ☆82Updated 4 years ago
• xinformatics / alphafold
  Open source code for AlphaFold to extract protein embeddings
  ☆27Updated 4 years ago
• JaesikKim / HiG2Vec
  ☆23Updated 2 years ago
• sokrypton / seqmodels
  ☆32Updated 2 months ago
• liudan111 / PLM-interact
  PLM-interact: extending protein language models to predict protein-protein interactions.
  ☆51Updated 3 months ago
• gcorso / NeuroSEED
  Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
  ☆73Updated 2 years ago
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆75Updated 4 years ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated 3 months ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆110Updated 3 years ago
• amyxlu / CPCProt
  Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
  ☆30Updated 4 months ago
• Doudna-lab / GARNET_DL
  ☆36Updated 10 months ago
• HarveyYan / RNAonGraph
  A repository for neural representational learning of RNA secondary structures
  ☆32Updated 5 years ago
• bio-ontology-research-group / deepgozero
  DeepGO with Fuzzy DL
  ☆31Updated 3 years ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆43Updated 4 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated this week
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆66Updated 3 years ago
• LinearFold / LinearPartition
  Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
  ☆31Updated last year
• spetti / SMURF
  ☆134Updated 3 years ago