Alternatives and similar repositories for SMURF:

Users that are interested in SMURF are comparing it to the libraries listed below

• greener-group / progres
  Fast protein structure searching or your money back
  ☆95Updated last week
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆164Updated 6 months ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆95Updated last year
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆55Updated 3 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• TattaBio / gLM2
  ☆57Updated 4 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆84Updated last year
• alex-hh / deep-protein-generation
  ☆56Updated 2 years ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆61Updated 9 months ago
• uci-cbcl / UFold
  ☆62Updated last year
• aqlaboratory / rgn2
  ☆104Updated last year
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆119Updated 3 weeks ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆117Updated 3 months ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆53Updated 2 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆47Updated 2 months ago
• OATML-Markslab / Tranception
  Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"
  ☆146Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆24Updated last year
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆49Updated last month
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆33Updated 3 weeks ago
• rmrao / msa-transformer
  MSA Transformer reproduction code
  ☆72Updated 3 years ago
• LinearFold / LinearPartition
  Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
  ☆29Updated 8 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆100Updated 5 months ago
• debbiemarkslab / variational-synthesis
  Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…
  ☆31Updated 3 years ago
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆58Updated 2 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆111Updated 3 years ago
• jaswindersingh2 / SPOT-RNA
  RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
  ☆97Updated 2 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆81Updated 10 months ago
• Doudna-lab / GARNET_DL
  ☆33Updated last month
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated last year