☆134Sep 14, 2022Updated 3 years ago
Alternatives and similar repositories for SMURF
Users that are interested in SMURF are comparing it to the libraries listed below
Sorting:
- ☆37Oct 16, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- ☆11Apr 25, 2021Updated 4 years ago
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆15Dec 21, 2023Updated 2 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 3 weeks ago
- ☆33Sep 19, 2025Updated 5 months ago
- A collection of *fold* tools☆302Aug 8, 2025Updated 6 months ago
- Making Protein Design accessible to all via Google Colab!☆886Dec 8, 2025Updated 2 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- Protein hallucination and inpainting with RoseTTAFold☆279Mar 30, 2023Updated 2 years ago
- Protein Structure Archiver☆14Sep 10, 2025Updated 5 months ago
- Contact map alignment☆42Feb 3, 2021Updated 5 years ago
- ☆117Dec 7, 2022Updated 3 years ago
- a pytorch version for GREMLIN, used to predict the protein contacts by coevolution method.☆17May 30, 2021Updated 4 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Trainable AlphaFold implementation in JAX☆159Aug 6, 2022Updated 3 years ago
- ☆18Mar 13, 2024Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago
- An open-source platform for developing protein models beyond AlphaFold.☆413Jun 26, 2024Updated last year
- Universal framework for physically based computational protein design☆37Aug 19, 2023Updated 2 years ago
- ☆110Nov 28, 2023Updated 2 years ago
- ☆33Oct 14, 2024Updated last year
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆11Apr 14, 2022Updated 3 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆113Nov 8, 2023Updated 2 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆59Oct 17, 2022Updated 3 years ago
- Structure prediction of alternative protein conformations☆82Feb 24, 2025Updated last year
- Deep ResNet-based protein contact prediction☆20Mar 30, 2020Updated 5 years ago
- LMetalSite: alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learn…☆19Oct 23, 2025Updated 4 months ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆63Oct 28, 2025Updated 4 months ago
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Jul 27, 2024Updated last year
- ☆15Apr 3, 2025Updated 11 months ago
- GitHub for AI4PD 2023 Workshop in Chile☆12Oct 12, 2023Updated 2 years ago
- ☆11Feb 13, 2024Updated 2 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- ☆30Oct 20, 2023Updated 2 years ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Aug 29, 2023Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆109Feb 19, 2026Updated last week