Insights into the inner workings of transformer models for protein function prediction
☆14Feb 9, 2024Updated 2 years ago
Alternatives and similar repositories for xai-proteins
Users that are interested in xai-proteins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- MolKGNN is a deep learning model for predicting biological activity or molecular properties. It features in 1. SE(3)-invariance 2. confor…☆13Jan 22, 2024Updated 2 years ago
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 3 years ago
- Large-scale Data Classification based on the Integrated Fusion of Fuzzy Learning and Graph Neural Network☆14Nov 2, 2023Updated 2 years ago
- Learning image representations for anomaly detection: application to discovery of histological alterations in drug development☆23Jan 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The official implementation of "A Theory of Link Prediction via Relational Weisfeiler-Leman on Knowledge Graphs" (NeurIPS 2023)☆13Sep 1, 2025Updated last year
- ☆63Sep 11, 2024Updated last year
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆18Jan 14, 2025Updated last year
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆16Aug 28, 2025Updated last year
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- ☆29Jul 17, 2024Updated 2 years ago
- ☆23May 24, 2024Updated 2 years ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- Graphical Representation of Ancestral Sequence Predictions☆14Mar 6, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Dataloader for applying sequence models to personalized genomics☆29Updated this week
- PaiNN in jax☆11Jan 14, 2025Updated last year
- ☆14Jul 11, 2026Updated last month
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆23Apr 22, 2026Updated 4 months ago
- ☆33Aug 12, 2024Updated 2 years ago
- ☆57Aug 28, 2024Updated 2 years ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- A multimodal dataset for google map restaurants.☆12Sep 28, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆31Oct 20, 2023Updated 2 years ago
- Structure-Informed Protein Language Model☆40Feb 15, 2024Updated 2 years ago
- Ancestral sequence reconstruction with gap-state inference using IQ-TREE☆15Jul 26, 2026Updated last month
- Gibbs sampling for generating protein sequences☆59Jan 17, 2025Updated last year
- ☆28Oct 21, 2022Updated 3 years ago
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆13Nov 1, 2023Updated 2 years ago
- DeepGO with Fuzzy DL☆34Sep 19, 2022Updated 3 years ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆36Jul 28, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A deep learning-based predictor of enzyme optimal pH☆12Jun 25, 2025Updated last year
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆16Jun 7, 2023Updated 3 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago
- VectorTalker: SVG Talking Face Generation with Progressive Vectorisation☆14Dec 25, 2023Updated 2 years ago
- ☆15Dec 26, 2025Updated 8 months ago
- Actor-based Communication via Reaction-Diffusion. A molecular communication simulator. Simulates stochastic reaction-diffusion systems.☆14Nov 26, 2024Updated last year