MarkusWenzel / xai-proteins
Insights into the inner workings of transformer models for protein function prediction
☆12Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for xai-proteins
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆30Updated 2 weeks ago
- Results and data from the pilot round of the Protein Engineering Tournament☆23Updated last week
- ☆27Updated 3 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆62Updated 4 months ago
- Biological prediction models made simple.☆33Updated last week
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆38Updated last year
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆16Updated last year
- ☆29Updated 2 months ago
- PLM based active learning model for protein engineering☆54Updated 3 months ago
- Predict the structure of immune receptor proteins☆47Updated 2 weeks ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆35Updated this week
- Fast deep learning methods for large-scale protein-protein interaction screening☆24Updated last month
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆12Updated 8 months ago
- ☆29Updated 3 weeks ago
- a collection of colabs useful for molecular biology☆27Updated 8 months ago
- Template-based protein design with Raygun☆44Updated 3 weeks ago
- ☆23Updated this week
- ☆21Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆26Updated 3 months ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆60Updated this week
- Graph Network for protein-protein interface including language model features☆25Updated 7 months ago
- ☆53Updated last month
- Rendering protein mutation movies from predicted 3D structures☆20Updated 11 months ago
- Spectral Framework For AI Model Evaluation☆25Updated last month
- ☆29Updated last year
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆11Updated 8 months ago
- Protein Structure Archiver☆12Updated 5 months ago
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆11Updated 6 months ago
- Machine learning-driven antibody design☆51Updated last year
- Benchmarking Pipeline for Prediction of Protein-Protein Interactions☆11Updated 2 years ago