Insights into the inner workings of transformer models for protein function prediction
☆14Feb 9, 2024Updated 2 years ago
Alternatives and similar repositories for xai-proteins
Users that are interested in xai-proteins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- ☆57Sep 11, 2024Updated last year
- MolKGNN is a deep learning model for predicting biological activity or molecular properties. It features in 1. SE(3)-invariance 2. confor…☆14Jan 22, 2024Updated 2 years ago
- Large-scale Data Classification based on the Integrated Fusion of Fuzzy Learning and Graph Neural Network☆13Nov 2, 2023Updated 2 years ago
- Learning image representations for anomaly detection: application to discovery of histological alterations in drug development☆20Jan 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The official implementation of "A Theory of Link Prediction via Relational Weisfeiler-Leman on Knowledge Graphs" (NeurIPS 2023)☆12Sep 1, 2025Updated 8 months ago
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆16Aug 28, 2025Updated 8 months ago
- The demo for "Sawtooth Factorial Topic Embeddings Guided Gamma Belief Network" in ICML 2021☆10Aug 17, 2021Updated 4 years ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆17Dec 21, 2025Updated 4 months ago
- Dataloader for applying sequence models to personalized genomics☆30Updated this week
- ☆10Mar 19, 2024Updated 2 years ago
- Graphical Representation of Ancestral Sequence Predictions☆13Mar 6, 2023Updated 3 years ago
- ☆19Mar 23, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆22May 24, 2024Updated last year
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- ☆13Mar 26, 2024Updated 2 years ago
- Implements a compositional algorithm for computing shortest paths on weighted graphs☆12Sep 1, 2023Updated 2 years ago
- PaiNN in jax☆11Jan 14, 2025Updated last year
- ☆33Aug 12, 2024Updated last year
- ☆57Aug 28, 2024Updated last year
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆23Apr 22, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A multimodal dataset for google map restaurants.☆12Sep 28, 2022Updated 3 years ago
- ☆92May 29, 2025Updated 11 months ago
- Structure-Informed Protein Language Model☆38Feb 15, 2024Updated 2 years ago
- MIRA sequence assembler☆33Jan 2, 2025Updated last year
- ☆27Oct 21, 2022Updated 3 years ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- Wrapper tool for ancestral sequence and indel reconstruction using IQ-TREE☆12Oct 20, 2025Updated 6 months ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆61Apr 29, 2025Updated last year
- ☆21Jul 18, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- DeepGO with Fuzzy DL☆34Sep 19, 2022Updated 3 years ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 4 years ago
- Protein stability prediction using rewired protein generative models☆74Dec 25, 2025Updated 4 months ago
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆13Nov 1, 2023Updated 2 years ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆15Jun 7, 2023Updated 2 years ago
- ☆30Oct 20, 2023Updated 2 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago