Insights into the inner workings of transformer models for protein function prediction
☆14Feb 9, 2024Updated 2 years ago
Alternatives and similar repositories for xai-proteins
Users that are interested in xai-proteins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- ☆55Sep 11, 2024Updated last year
- MolKGNN is a deep learning model for predicting biological activity or molecular properties. It features in 1. SE(3)-invariance 2. confor…☆14Jan 22, 2024Updated 2 years ago
- Large-scale Data Classification based on the Integrated Fusion of Fuzzy Learning and Graph Neural Network☆13Nov 2, 2023Updated 2 years ago
- Learning image representations for anomaly detection: application to discovery of histological alterations in drug development☆20Jan 9, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- The official implementation of "A Theory of Link Prediction via Relational Weisfeiler-Leman on Knowledge Graphs" (NeurIPS 2023)☆12Sep 1, 2025Updated 6 months ago
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆15Aug 28, 2025Updated 7 months ago
- The demo for "Sawtooth Factorial Topic Embeddings Guided Gamma Belief Network" in ICML 2021☆10Aug 17, 2021Updated 4 years ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- ☆10Mar 19, 2024Updated 2 years ago
- Dataloader for applying sequence models to personalized genomics☆28Updated this week
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- ☆19Mar 23, 2022Updated 4 years ago
- ☆21May 24, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- ☆13Mar 26, 2024Updated 2 years ago
- Implements a compositional algorithm for computing shortest paths on weighted graphs☆12Sep 1, 2023Updated 2 years ago
- PaiNN in jax☆11Jan 14, 2025Updated last year
- ☆33Aug 12, 2024Updated last year
- ☆58Aug 28, 2024Updated last year
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated 11 months ago
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆24Aug 20, 2024Updated last year
- ☆90May 29, 2025Updated 9 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Structure-Informed Protein Language Model☆38Feb 15, 2024Updated 2 years ago
- MIRA sequence assembler☆32Jan 2, 2025Updated last year
- ☆27Oct 21, 2022Updated 3 years ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆59Apr 29, 2025Updated 11 months ago
- Wrapper tool for ancestral sequence and indel reconstruction using IQ-TREE☆11Oct 20, 2025Updated 5 months ago
- ☆21Jul 18, 2024Updated last year
- Protein function prediction using protein structures and deep graph neural networks.☆20Jan 24, 2025Updated last year
- DeepGO with Fuzzy DL☆33Sep 19, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 4 years ago
- Protein stability prediction using rewired protein generative models☆68Dec 25, 2025Updated 3 months ago
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆13Nov 1, 2023Updated 2 years ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆15Jun 7, 2023Updated 2 years ago
- ☆30Oct 20, 2023Updated 2 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- VectorTalker: SVG Talking Face Generation with Progressive Vectorisation☆15Dec 25, 2023Updated 2 years ago