MarkusWenzel / xai-proteinsLinks
Insights into the inner workings of transformer models for protein function prediction
☆14Updated last year
Alternatives and similar repositories for xai-proteins
Users that are interested in xai-proteins are comparing it to the libraries listed below
Sorting:
- Biological prediction models made simple.☆47Updated last month
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 8 months ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆52Updated 3 months ago
- ☆25Updated 2 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- ☆75Updated last year
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆15Updated 3 months ago
- ☆36Updated 11 months ago
- ☆32Updated 3 months ago
- Unsupervised neural network for learning embeddings of GO terms.☆20Updated 3 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆32Updated 2 years ago
- Predict the structure of immune receptor proteins☆56Updated last year
- Template-based protein design with Raygun☆76Updated 2 weeks ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆38Updated 3 months ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Updated 3 years ago
- ☆30Updated 2 years ago
- ☆32Updated last year
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Updated 11 months ago
- ☆48Updated last week
- Evolutionary velocity with protein language models☆94Updated last week
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 7 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated 2 weeks ago
- Reference-free analysis of genetic architecture☆19Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- Code for LazyAF pipeline☆21Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆46Updated 8 months ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆16Updated 11 months ago
- Protein language model trained on coding DNA☆51Updated last year
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Updated 2 years ago