MarkusWenzel / xai-proteinsLinks
Insights into the inner workings of transformer models for protein function prediction
☆14Updated last year
Alternatives and similar repositories for xai-proteins
Users that are interested in xai-proteins are comparing it to the libraries listed below
Sorting:
- Biological prediction models made simple.☆48Updated 2 weeks ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆58Updated 5 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 10 months ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- ☆33Updated 4 months ago
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆15Updated 5 months ago
- ☆78Updated last year
- ☆33Updated last year
- Reference-free analysis of genetic architecture☆21Updated last year
- Predict the structure of immune receptor proteins☆59Updated last year
- ☆36Updated last year
- Template-based protein design with Raygun☆76Updated this week
- ☆25Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated 2 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Updated 5 months ago
- ☆50Updated last month
- Evolutionary velocity with protein language models☆95Updated last month
- Unsupervised neural network for learning embeddings of GO terms.☆20Updated 3 years ago
- ☆47Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆66Updated 4 months ago
- ☆30Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated 2 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆16Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆46Updated last month
- ☆89Updated this week
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 9 months ago
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆15Updated 2 weeks ago
- Fast and accurate protein structure prediction☆57Updated last year