Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
☆41Jul 6, 2023Updated 3 years ago
Alternatives and similar repositories for GCN-for-Structure-and-Function
Users that are interested in GCN-for-Structure-and-Function are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Graph-based representation learning method for protein function prediction☆24Aug 25, 2025Updated last year
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- Train an Amino Acid Embeddings (or a dragon?)☆16Apr 16, 2017Updated 9 years ago
- ☆19Oct 8, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Precision-Recall based assessment for CAFA☆16Dec 6, 2019Updated 6 years ago
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated 2 years ago
- Transformer for protein function prediction (version 2)☆14Oct 24, 2026Updated last week
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆36Jul 28, 2021Updated 5 years ago
- Ligand-binding site classification with deep graph neural networks.☆10Sep 24, 2023Updated 3 years ago
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 6 years ago
- Graph Learning of INTER-protein contacts☆11Feb 20, 2022Updated 4 years ago
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Mar 26, 2026Updated 7 months ago
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Jul 14, 2023Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆745Dec 11, 2022Updated 3 years ago
- Feature flags in R☆11Mar 22, 2025Updated last year
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 3 years ago
- ☆11Dec 13, 2022Updated 3 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆29May 29, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Deep functional residue identification☆354Mar 24, 2023Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 8 months ago
- Get protein embeddings from protein sequences☆511Apr 28, 2023Updated 3 years ago
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- Computes a molecular graph for protein structures.☆59Oct 26, 2026Updated last week
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,324May 22, 2025Updated last year
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12May 21, 2018Updated 8 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆21Aug 3, 2018Updated 8 years ago
- A case study on Pfam dataset to classify protein families.☆32Oct 10, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Shiny app for proteomics data analysis☆14Jul 6, 2021Updated 5 years ago
- software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"☆13Oct 21, 2026Updated last week
- Web cards/apps describing peptides☆31Apr 26, 2023Updated 3 years ago
- PaccMann models for protein language modeling☆44Nov 10, 2021Updated 4 years ago
- Java+Springboot+Vue开发的网上商城管理系统，商城系统，毕业设计/课程设计☆10Mar 15, 2025Updated last year
- ☆128Feb 16, 2021Updated 5 years ago
- A Python package for extracting protein sequence features☆62Aug 23, 2022Updated 4 years ago