Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
☆41Jul 6, 2023Updated 3 years ago
Alternatives and similar repositories for GCN-for-Structure-and-Function
Users that are interested in GCN-for-Structure-and-Function are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Graph-based representation learning method for protein function prediction☆24Aug 25, 2025Updated last year
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- Train an Amino Acid Embeddings (or a dragon?)☆16Apr 16, 2017Updated 9 years ago
- Precision-Recall based assessment for CAFA☆16Dec 6, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Oct 8, 2020Updated 6 years ago
- Graph Learning of INTER-protein contacts☆11Feb 20, 2022Updated 4 years ago
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 3 years ago
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 6 years ago
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- Shiny app for proteomics data analysis☆14Jul 6, 2021Updated 5 years ago
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- Feature flags in R☆11Mar 22, 2025Updated last year
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Jul 14, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Transformer for protein function prediction (version 2)☆14Aug 31, 2026Updated last month
- ☆94Sep 7, 2022Updated 4 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- A case study on Pfam dataset to classify protein families.☆32Oct 10, 2019Updated 7 years ago
- Web cards/apps describing peptides☆31Apr 26, 2023Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆745Dec 11, 2022Updated 3 years ago
- State-of-the-art ab initio prediction of 1D protein structure annotations☆13Feb 28, 2021Updated 5 years ago
- Material for the useR2020 tutorial☆14Aug 12, 2020Updated 6 years ago
- neuropeptide prediction☆15Sep 2, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Parametric Building of de novo Functional Topologies☆46Mar 11, 2022Updated 4 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Java+Springboot+Vue开发的网上商城管理系统，商城系统，毕业设计/课程设计☆10Mar 15, 2025Updated last year
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 5 years ago
- software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"☆13Mar 28, 2021Updated 5 years ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆58Mar 24, 2021Updated 5 years ago
- Python xml.sax☆10Mar 19, 2019Updated 7 years ago
- ProteinGCN: Protein model quality assessment using Graph Convolutional Networks☆119Jul 25, 2024Updated 2 years ago
- A generative adversarial network-based model to generate synthetic RNA sequences to target proteins☆11Sep 2, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Oct 6, 2020Updated 6 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Implementation of Protein Classification based on subcellular localization using ProtBert(Rostlab/prot_bert_bfd_localization) model from …☆43May 3, 2024Updated 2 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,325May 22, 2025Updated last year
- Sito web del corso "LABORATORIO DI PROGRAMMAZIONE I" per Intelligenza Artificiale e per Statistica dell'Università degli studi di Trieste…☆20Aug 6, 2025Updated last year
- ☆13Apr 18, 2022Updated 4 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆106Jun 16, 2021Updated 5 years ago