xinformatics / alphafold
Open source code for AlphaFold to extract protein embeddings
☆26Updated 3 years ago
Alternatives and similar repositories for alphafold:
Users that are interested in alphafold are comparing it to the libraries listed below
- ☆45Updated 6 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆97Updated 6 months ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 2 years ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆55Updated this week
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆56Updated last year
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆34Updated 3 years ago
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆64Updated this week
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆93Updated 8 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆112Updated last month
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆57Updated 11 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆52Updated last month
- pyFoldX: python bindings for FoldX.☆44Updated 3 years ago
- open source repository☆136Updated last year
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆50Updated 4 months ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆59Updated 4 years ago
- ☆34Updated 3 years ago
- Efficient implementatin of ESM family.☆55Updated 2 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆46Updated 4 months ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Updated 11 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated 6 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆71Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year