Open source code for AlphaFold to extract protein embeddings
☆27Jul 26, 2021Updated 5 years ago
Alternatives and similar repositories for alphafold
Users that are interested in alphafold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12May 12, 2023Updated 3 years ago
- ☆27May 9, 2022Updated 4 years ago
- Deep ResNet-based protein contact prediction☆19Mar 30, 2020Updated 6 years ago
- ☆18Dec 10, 2022Updated 3 years ago
- pytorch implementation of trDesign☆45Mar 19, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Prot paper related materials☆11Sep 5, 2022Updated 3 years ago
- Contrastive learning harmonizing protein language models and natural language models☆44Jun 12, 2024Updated 2 years ago
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆15Dec 21, 2023Updated 2 years ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆14Aug 21, 2026Updated last week
- Estimate PTM hotspots in protein sequence alignments☆16Feb 6, 2019Updated 7 years ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39Jul 17, 2026Updated last month
- Bayesian Active Learning for Optimization and Uncertainty Quantification with Applications to Protein Docking☆13Apr 28, 2021Updated 5 years ago
- Printing text using protein structures☆14Aug 9, 2021Updated 5 years ago
- Energy-based Graph Convolutional Networks for Scoring Protein Docking Models☆11Aug 31, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- PaccMann models for protein language modeling☆44Nov 10, 2021Updated 4 years ago
- Unofficially Implements https://arxiv.org/abs/2112.05682 to get Linear Memory Cost on Attention for PyTorch☆12Jan 16, 2022Updated 4 years ago
- CArbohydrate-Protein Site IdentiFier☆16Aug 22, 2023Updated 3 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Tool for modelling the CDRs of antibodies☆35Nov 10, 2022Updated 3 years ago
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆35Feb 23, 2021Updated 5 years ago
- Deep learning prediction of protein residue-residue distances☆23Jun 28, 2022Updated 4 years ago
- SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignmen…☆11Feb 1, 2024Updated 2 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- IBM Molecule Generation Experience (MolGX) is a tool to accelerate an AI-driven design of new materials.☆16Oct 26, 2022Updated 3 years ago
- ☆16Nov 25, 2024Updated last year
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- ☆36Oct 20, 2020Updated 5 years ago
- Code for Fold2Seq paper from ICML 2021☆50May 25, 2022Updated 4 years ago
- PocketMaster is a flexible and automated tool for analyzing, clustering, and visualizing protein binding sites. It allows you to quickly …☆19Feb 22, 2026Updated 6 months ago
- A collection of resources related with Knowledge-augmented Graph Machine Learning for Drug Discovery.☆25Jun 28, 2024Updated 2 years ago
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆18Dec 21, 2025Updated 8 months ago
- Generative models of chemical data for PaccMann^RL☆13Jun 2, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- [NeurIPS 2019] LOIS: Learning to Optimize In Swarms, guided by posterior estimation☆18Aug 14, 2021Updated 5 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 6 months ago
- Training scripts for BERTax☆12Jun 12, 2024Updated 2 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated last year
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆39Jul 28, 2022Updated 4 years ago
- Protein structure datasets for machine learning.☆116Apr 22, 2025Updated last year
- Predict disorder and disorder binding from AlphaFold structures☆20Nov 25, 2024Updated last year