xinformatics / alphafoldLinks
Open source code for AlphaFold to extract protein embeddings
☆27Updated 3 years ago
Alternatives and similar repositories for alphafold
Users that are interested in alphafold are comparing it to the libraries listed below
Sorting:
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆49Updated last year
- RXN for biochemical reactions☆69Updated 2 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- Learning with uncertainty for biological discovery and design☆34Updated 2 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆35Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆72Updated last year
- ☆58Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆101Updated 9 months ago
- A Python package for extracting protein sequence features☆59Updated 2 years ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆58Updated last year
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆97Updated 2 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆113Updated 3 years ago
- ☆58Updated 8 months ago
- A 3D-equivariant neural network for protein structure accuracy estimation☆18Updated 2 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆82Updated 3 years ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated last year
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated 2 years ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆36Updated last year
- ☆58Updated 2 years ago
- open source repository☆138Updated last year
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 3 years ago
- ☆120Updated 11 months ago
- Official implementation of "Learning the language of protein structures"☆36Updated 3 weeks ago
- LoRA for protein language models☆40Updated last year
- Tool for modelling the CDRs of antibodies☆32Updated 2 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Updated 4 months ago
- Cython implementation of PDB -> DataFrame parsing☆23Updated 2 years ago