☆50Dec 2, 2024Updated last year
Alternatives and similar repositories for goPredSim
Users that are interested in goPredSim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆42Aug 29, 2025Updated last year
- DeepGO with GOPlus axioms☆104Oct 1, 2026Updated 3 weeks ago
- ☆23Mar 6, 2024Updated 2 years ago
- Get protein embeddings from protein sequences☆511Apr 28, 2023Updated 3 years ago
- ☆17Nov 11, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Oct 6, 2020Updated 6 years ago
- Precision-Recall based assessment for CAFA☆16Dec 6, 2019Updated 6 years ago
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆45Jul 27, 2024Updated 2 years ago
- Functional ANnoTAtion based on embedding space SImilArity☆22Sep 26, 2026Updated last month
- DrugDomain database☆11Sep 16, 2025Updated last year
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 6 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆21Feb 19, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆36Jul 28, 2021Updated 5 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆21Aug 3, 2018Updated 8 years ago
- DISTEVAL: A web-server for evaluating protein inter-residue distances☆18Mar 7, 2022Updated 4 years ago
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 8 years ago
- Deep networks for protein functional inference☆196Mar 11, 2026Updated 7 months ago
- Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention…☆19Jun 11, 2025Updated last year
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Jul 20, 2021Updated 5 years ago
- ☆18Nov 24, 2019Updated 6 years ago
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,324May 22, 2025Updated last year
- ☆34Oct 5, 2020Updated 6 years ago
- Code for paper titled, "Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins". Preprint available at: http://www.…☆18Jul 26, 2017Updated 9 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆80Sep 6, 2023Updated 3 years ago
- ☆10Nov 14, 2024Updated last year
- Deep functional residue identification☆354Mar 24, 2023Updated 3 years ago
- A fork for the old hhsuite-2.0.16☆13Nov 27, 2020Updated 5 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Sep 15, 2020Updated 6 years ago
- ☆11Oct 21, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- InterLabelGO+: Unraveling label correlations in protein function prediction☆16Aug 5, 2025Updated last year
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆46Oct 17, 2024Updated 2 years ago
- A Python Tool for Benchmarking Ontological Classification Methods☆55Jan 19, 2026Updated 9 months ago
- Code associated with the paper 'Deep learning models for unbiased sequence-based PPI prediction plateau at an accuracy of 0.65'☆12Jul 20, 2026Updated 3 months ago
- Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein In…☆28Feb 8, 2025Updated last year
- A Deep Learning Model for Protein Function Prediction☆18Jul 31, 2020Updated 6 years ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago