Prediction of binding residues for metal ions, nucleic acids, and small molecules.
☆37Sep 2, 2025Updated 9 months ago
Alternatives and similar repositories for bindPredict
Users that are interested in bindPredict are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Oct 21, 2022Updated 3 years ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Sep 21, 2022Updated 3 years ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆46Apr 22, 2023Updated 3 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆36Nov 18, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A series of scripts that facilitate the prediction of user-defined protein structural properties using AlphaFold2☆12Aug 28, 2023Updated 2 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆100Jan 24, 2023Updated 3 years ago
- ☆110Mar 7, 2022Updated 4 years ago
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 3 years ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated last year
- Ankh: Optimized Protein Language Model☆248Jun 16, 2025Updated last year
- GUI for Boltz☆35Jun 11, 2025Updated last year
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 5 years ago
- Data and analysis scripts for understanding molecular entropies, including conformer flexibility☆13Mar 29, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Transformer for protein function prediction☆34Oct 24, 2024Updated last year
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆167Apr 7, 2023Updated 3 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Jul 5, 2019Updated 6 years ago
- LMetalSite: alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learn…☆19Oct 23, 2025Updated 8 months ago
- Ligand-binding site classification with deep graph neural networks.☆10Sep 24, 2023Updated 2 years ago
- Python implementation of Bayesian hierarchical clustering and Bayesian rose trees algorithms.☆18Feb 16, 2021Updated 5 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 4 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆62Aug 3, 2024Updated last year
- ☆25Jan 4, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction☆36Aug 17, 2023Updated 2 years ago
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆14Feb 11, 2026Updated 4 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 2 years ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- This is the code for our paper Ligand Binding Prediction using Protein Structure Graphs and Residual Graph Attention Networks☆11Apr 29, 2022Updated 4 years ago
- Python utilities for handling Rosetta output and PDB files☆16Sep 26, 2011Updated 14 years ago
- C-library for calculating Solvent Accessible Surface Areas☆195May 31, 2026Updated 3 weeks ago
- ☆10Nov 17, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Machine Learning with Python☆12Jul 25, 2022Updated 3 years ago
- MolKGNN is a deep learning model for predicting biological activity or molecular properties. It features in 1. SE(3)-invariance 2. confor…☆20Jun 28, 2023Updated 3 years ago
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆23Oct 31, 2025Updated 7 months ago
- Biological Relationships - Biorels data preparation infrastructure for biology and drug discovery☆16May 19, 2025Updated last year
- Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository…☆14Feb 13, 2023Updated 3 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆106Jun 16, 2021Updated 5 years ago
- GPT-based protein language model for PTM site prediction☆19Aug 11, 2024Updated last year