Alternatives and similar repositories for bindPredict:

Users that are interested in bindPredict are comparing it to the libraries listed below

• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆47Updated 6 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated last month
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆48Updated 5 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated 10 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆83Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated last month
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆34Updated 3 months ago
• Doudna-lab / GARNET_DL
  ☆36Updated 3 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆36Updated this week
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆37Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆35Updated last year
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆59Updated 9 months ago
• tymor22 / tm-vec
  ☆67Updated 7 months ago
• alchemab / parapred-pytorch
  PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
  ☆20Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆42Updated 3 weeks ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆40Updated last year
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆32Updated 3 weeks ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated last year
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated this week
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆68Updated 5 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆31Updated last year
• jbloomlab / SARS-CoV-2-RBD_DMS
  Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike
  ☆45Updated 3 years ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated last year
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated last year
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆35Updated 7 months ago
• biofold / ddgun
  predict stability change upon mutation
  ☆28Updated 10 months ago
• SNU-CSSB / RF2-Lite
  ☆27Updated 11 months ago