Alternatives and similar repositories for bindPredict

Users that are interested in bindPredict are comparing it to the libraries listed below

• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated last month
• Doudna-lab / GARNET_DL
  ☆36Updated 9 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 6 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆61Updated 3 months ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆70Updated 4 months ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• JudeWells / chainsaw
  ☆43Updated last year
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆61Updated 7 months ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆108Updated 3 weeks ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆63Updated 3 years ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• aqlaboratory / rgn2
  ☆107Updated last year
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆56Updated 11 months ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆33Updated last week
• proteinphysiologylab / frustratometeR
  ☆37Updated 4 months ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆53Updated 3 months ago
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆35Updated 3 years ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆51Updated last year
• Faezov / PDBrenum
  ☆30Updated 5 months ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆25Updated last year
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆55Updated last year
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆60Updated 2 years ago
• maslov-group / DR-BERT
  ☆25Updated 2 years ago