Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
☆30Jul 20, 2025Updated last year
Alternatives and similar repositories for CPCProt
Users that are interested in CPCProt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆18Sep 10, 2024Updated 2 years ago
- SWift and Optimized Recognition of protein Domains☆30Aug 14, 2026Updated 2 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- ☆13Sep 8, 2021Updated 5 years ago
- dMaSIF implementation for google colab☆36Mar 24, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13May 24, 2026Updated 5 months ago
- ☆15Nov 16, 2023Updated 2 years ago
- Protein common interface databases☆10Apr 13, 2019Updated 7 years ago
- ☆22Jun 10, 2024Updated 2 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 5 years ago
- ☆18Apr 15, 2023Updated 3 years ago
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- Fragment binding prediction with ColabFold☆47Oct 16, 2026Updated 2 weeks ago
- Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.☆22May 19, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Python implementation of DTINet☆16Oct 30, 2022Updated 4 years ago
- ☆17Nov 11, 2022Updated 3 years ago
- HyperPCM: Robust task-conditioned modeling of drug-target interactions☆38Oct 1, 2024Updated 2 years ago
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 3 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 3 years ago
- ☆257May 22, 2023Updated 3 years ago
- A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site☆12Nov 12, 2021Updated 4 years ago
- Ligand-binding site classification with deep graph neural networks.☆10Sep 24, 2023Updated 3 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 7 months ago
- ☆10Aug 28, 2024Updated 2 years ago
- Official repository for the Protriever paper☆17Jun 5, 2025Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆55Aug 29, 2025Updated last year
- A 3D-equivariant neural network for protein structure accuracy estimation☆22Feb 24, 2023Updated 3 years ago
- An end-to-end heterogeneous graph representation learning-based framework for drug-target interaction prediction☆31Jul 5, 2022Updated 4 years ago
- UniRep model, usage, and examples.☆367Mar 1, 2026Updated 7 months ago
- reimplementation of mfDCA in python☆12Jul 7, 2019Updated 7 years ago
- ☆18Nov 24, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Drug-Target Interaction Prediction with GraphAttention networks☆20May 7, 2020Updated 6 years ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- farmer is an automated machine learning library.👨🌾☆12Oct 15, 2021Updated 5 years ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆17Sep 30, 2024Updated 2 years ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆177Oct 11, 2023Updated 3 years ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago