amyxlu / CPCProt
Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
☆24Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for CPCProt
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆27Updated 3 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆18Updated last year
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 8 months ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆25Updated 2 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆19Updated 2 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆42Updated 9 months ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆31Updated 6 months ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆60Updated this week
- ☆43Updated last year
- pyFoldX: python bindings for FoldX.☆42Updated 3 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆33Updated last year
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- Predict the structure of immune receptor proteins☆47Updated 2 weeks ago
- Public repository describing training and testing of AntiBERTa.☆54Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- ☆34Updated 3 years ago
- ☆18Updated 3 years ago
- Learning with uncertainty for biological discovery and design☆33Updated last year
- ☆29Updated 3 weeks ago
- ☆20Updated 2 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆54Updated last year
- Paratope Prediction using Deep Learning☆59Updated last year
- Transformer Based Language Model for Peptide Property Prediction☆34Updated 3 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆28Updated last year
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆26Updated 4 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆62Updated 4 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆83Updated 2 weeks ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆31Updated 2 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆58Updated 3 months ago
- A Python 3 version of the protein descriptor package propy☆39Updated last year