Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
☆75Oct 14, 2023Updated 2 years ago
Alternatives and similar repositories for NeuroSEED
Users that are interested in NeuroSEED are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and Data for Generative modeling for AAV design☆10Nov 13, 2023Updated 2 years ago
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated 2 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Sep 21, 2022Updated 3 years ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Spectral Graph Attention Network with Fast Eigen-approximation☆11Dec 24, 2021Updated 4 years ago
- This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.☆28Aug 31, 2022Updated 3 years ago
- Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)☆38Feb 17, 2025Updated last year
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated 10 months ago
- To be a next-generation DL-based phenotype prediction from genome mutations.☆19May 17, 2021Updated 5 years ago
- Python package for the ICML 2022 paper "Unsupervised Ground Metric Learning Using Wasserstein Singular Vectors".☆10Sep 2, 2024Updated last year
- Variational Autoencoder with non-euclidean (hyperbolic) latent space☆13Nov 25, 2022Updated 3 years ago
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 5 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Hypergraph Factorisation☆26Nov 28, 2024Updated last year
- ☆10Jul 6, 2023Updated 2 years ago
- ☆11Apr 16, 2020Updated 6 years ago
- SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)☆66May 9, 2020Updated 6 years ago
- Experiments in protein folding through language modeling☆10Dec 10, 2021Updated 4 years ago
- Embedding graphs in symmetric spaces☆30Sep 30, 2021Updated 4 years ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39Updated this week
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆17May 2, 2021Updated 5 years ago
- Flow-matching for coarse graining of miniproteins.☆20Nov 18, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆15Jun 7, 2023Updated 3 years ago
- The repository contains source code and data from the paper titled "Recurrence and Self-Attention vs the Transformer for Time-Series Clas…☆19Apr 14, 2022Updated 4 years ago
- Official implementation of the paper "SAINT"☆17Mar 12, 2022Updated 4 years ago
- ☆10May 16, 2020Updated 6 years ago
- ☆13Aug 13, 2018Updated 7 years ago
- Comparison of active site and full kinase sequences for drug-target affinity prediction and molecular generation. Full paper: https://pub…☆37Oct 3, 2022Updated 3 years ago
- GENA-LM is a transformer masked language model trained on human DNA sequence.☆228Updated this week
- Ankh: Optimized Protein Language Model☆248Jun 16, 2025Updated 11 months ago
- MSA Transformer reproduction code☆92Oct 21, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- IgSimulator is a versatile tool for simulation of immunoglobulin repertoire☆12Nov 25, 2016Updated 9 years ago
- ☆19Dec 1, 2021Updated 4 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 2 months ago
- Boltzmann machine learning for Potts models of biological data☆13Jul 24, 2024Updated last year
- The repository contains all the code for the paper amino acid encoding using deep learning application☆20Jul 5, 2024Updated last year
- Import/Export routines for MALDIquant☆12Oct 20, 2025Updated 7 months ago
- ☆22Mar 19, 2025Updated last year