Alternatives and similar repositories for NeuroSEED:

Users that are interested in NeuroSEED are comparing it to the libraries listed below

• MachineLearningLifeScience / meaningful-protein-representations
  ☆109Updated 3 years ago
• aedera / anc2vec
  Unsupervised neural network for learning embeddings of GO terms.
  ☆16Updated 3 years ago
• genbio-ai / AIDO
  AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…
  ☆75Updated 3 months ago
• snap-stanford / multiscale-interactome
  ☆65Updated last year
• mims-harvard / PDGrapher
  Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks
  ☆24Updated 4 months ago
• HarveyYan / RNAonGraph
  A repository for neural representational learning of RNA secondary structures
  ☆32Updated 5 years ago
• RECOVERcoalition / Recover
  Exploring the space of drug combinations to discover synergistic drugs using Active Learning
  ☆24Updated 8 months ago
• leeyang / DRfold2
  ☆23Updated 2 weeks ago
• OpenBioML / protein-lm-scaling
  ☆59Updated last year
• Ieremie / TransformerGO
  ☆17Updated 3 years ago
• Rostlab / goPredSim
  ☆46Updated 4 months ago
• PaccMann / paccmann_datasets
  pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/
  ☆28Updated 6 months ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆40Updated 11 months ago
• lightonai / RITA
  RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…
  ☆96Updated 2 years ago
• alrojo / UniLanguage
  Homology reduced UniProt, train-/valid-/testsets for language modeling
  ☆16Updated 3 years ago
• genbio-ai / ModelGenerator
  AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…
  ☆47Updated last week
• chenkenbio / SpliceBERT
  Primary RNA sequence model
  ☆36Updated 11 months ago
• Vincentx15 / Equi-RC
  Equivariant layers for RC-complement symmetry in DNA sequence data
  ☆11Updated 3 years ago
• instadeepai / bioclip
  Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs
  ☆24Updated last year
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆63Updated last year
• wangshenguiuc / set2gaussian
  code repo for Set2Gaussian
  ☆15Updated 4 years ago
• ml4bio / e2efold
  pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
  ☆113Updated last year
• bio-ontology-research-group / deepgo
  Function prediction using a deep ontology-aware classifier
  ☆82Updated 2 years ago
• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆114Updated 5 months ago
• HanwenXuTHU / BioTranslatorProject
  ☆33Updated last year
• BorgwardtLab / proteinshake
  Protein structure datasets for machine learning.
  ☆105Updated this week
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆35Updated last year
• ml-jku / DeepRC
  DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning
  ☆118Updated last year
• lucidrains / tf-bind-transformer
  A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
  ☆84Updated 2 years ago
• DeepGraphLearning / PEER_Benchmark
  PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
  ☆89Updated 2 years ago