☆33Sep 19, 2025Updated 6 months ago
Alternatives and similar repositories for seqmodels
Users that are interested in seqmodels are comparing it to the libraries listed below
Sorting:
- ☆11Apr 25, 2021Updated 4 years ago
- functional genomic data integration☆10Sep 22, 2019Updated 6 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆59Oct 17, 2022Updated 3 years ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- Contact map alignment☆43Feb 3, 2021Updated 5 years ago
- a pytorch version for GREMLIN, used to predict the protein contacts by coevolution method.☆17May 30, 2021Updated 4 years ago
- ☆20Jul 16, 2021Updated 4 years ago
- Contact map alignment☆16May 10, 2018Updated 7 years ago
- ☆13Dec 5, 2024Updated last year
- ☆134Sep 14, 2022Updated 3 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the fam…☆23Jul 3, 2016Updated 9 years ago
- ☆26May 9, 2022Updated 3 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- ☆18Dec 22, 2017Updated 8 years ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- Tutorial files☆12Aug 7, 2024Updated last year
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 3 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆114Nov 8, 2023Updated 2 years ago
- Solvent Accessible Surface calculation software for biomolecules.☆18Apr 23, 2023Updated 2 years ago
- Neural network model for prediction of amino-acid sequence from a protein backbone structure☆25Mar 5, 2025Updated last year
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated last month
- JupyterLab extension for py3Dmol☆22Jan 2, 2022Updated 4 years ago
- Demos of many Rosetta applications☆23Jun 10, 2025Updated 9 months ago
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆11Apr 14, 2022Updated 3 years ago
- ☆135Jun 3, 2025Updated 9 months ago
- ☆38Oct 16, 2024Updated last year
- Deep learning prediction of protein residue-residue distances☆23Jun 28, 2022Updated 3 years ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 6 years ago
- "Global Importance Analysis: A Method to Quantify Importance of Genomic Features in Deep Neural Networks" by Koo et al.☆13Jun 22, 2022Updated 3 years ago
- Repository of all EJP lab computational projects☆15Feb 13, 2026Updated last month
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 2 years ago
- Long disorder consensus predictor☆20Sep 2, 2025Updated 6 months ago
- A protein 3D structure prediction application☆67May 5, 2021Updated 4 years ago
- Protein hallucination and inpainting with RoseTTAFold☆280Mar 30, 2023Updated 2 years ago
- Generate A3M and TGT file from a given sequence in FASTA format.☆11Nov 16, 2020Updated 5 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Apr 12, 2019Updated 6 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago