amun-ai / hyphaLinks
A distributed application framework for large-scale data management and AI model serving
☆18Updated last week
Alternatives and similar repositories for hypha
Users that are interested in hypha are comparing it to the libraries listed below
Sorting:
- Specification for the bioimage.io model description file.☆21Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆42Updated this week
- ☆45Updated this week
- ☆12Updated last month
- A 3D interactivity toolbox for napari☆35Updated this week
- Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.☆24Updated last week
- ☆25Updated last month
- A napari plugin for zarr backed OME-NGFF images☆33Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 4 months ago
- A draft specification for the nifti-zarr format☆14Updated 2 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆34Updated 2 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 2 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated last month
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆34Updated 2 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆14Updated last week
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated 2 weeks ago
- Paint segmentations directly to on-disk/remote zarr arrays☆14Updated last year
- A napari plugin for itk-elastix☆38Updated last year
- Python libraries for loading, running and packaging bioimage.io models☆31Updated last month
- native Python dataclasses for the OME data model☆56Updated 3 weeks ago
- StarDist plugin for napari☆38Updated 10 months ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆20Updated 7 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆16Updated 2 weeks ago
- Fusing image tiles with dask array's map_blocks☆30Updated last year
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆79Updated 2 weeks ago
- 3D/4D volumetric rendering of microscopy data☆23Updated last month
- ☆22Updated 4 years ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated 2 years ago