Alternatives and similar repositories for hypha

Users that are interested in hypha are comparing it to the libraries listed below

• bioimage-io / spec-bioimage-io
  Specification for the bioimage.io model description file.
  ☆21Updated this week
• scalableminds / webknossos-libs
  Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
  ☆27Updated last week
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆55Updated this week
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆20Updated 2 months ago
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆55Updated last month
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆20Updated this week
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆34Updated 2 weeks ago
• haesleinhuepf / napari-assistant
  ☆33Updated 8 months ago
• ome / napari-omero
  Browse your OMERO database from within napari.
  ☆40Updated this week
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated 2 months ago
• e11bio / volara
  Block-wise operations for large nD volumes
  ☆43Updated this week
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 4 years ago
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆42Updated 3 weeks ago
• guiwitz / napari_demo
  ☆23Updated 4 years ago
• BioVisionCenter / ngio
  Ngio is a Python library to streamline OME-Zarr image analysis workflows.
  ☆37Updated 3 weeks ago
• allen-cell-animated / agave
  High quality visualization for volumetric image data
  ☆54Updated this week
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆65Updated 3 weeks ago
• mobie / mobie-viewer-fiji
  ☆41Updated last week
• fmi-faim / faim-ipa
  A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
  ☆18Updated last week
• mobie / mobie
  MultiModal Big Image Data Sharing and Exploration
  ☆18Updated 2 years ago
• InsightSoftwareConsortium / GetYourBrainTogether
  Get Your Brain Together Neuroimage Registration Workshops and Hackathons
  ☆21Updated last year
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆25Updated last year
• BIOP / BIOP-desktop
  ☆14Updated 2 months ago
• neuroscales / nifti-zarr
  A draft specification for the nifti-zarr format
  ☆16Updated last month
• clEsperanto / pyclesperanto
  GPU-accelerated Image Processing library for Python
  ☆52Updated this week
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆47Updated last week
• BioImageTools / ome-zarr-image-analysis-nextflow
  Basic example of using OME-Zarr in a Nextflow pipeline
  ☆19Updated 5 months ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated 3 weeks ago
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆14Updated 3 weeks ago
• imjoy-team / kaibu
  Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.
  ☆35Updated 9 months ago