ncbi / cwl-ngs-workflows-cbbLinks
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
☆23Updated 2 months ago
Alternatives and similar repositories for cwl-ngs-workflows-cbb
Users that are interested in cwl-ngs-workflows-cbb are comparing it to the libraries listed below
Sorting:
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- ☆36Updated 5 months ago
- WDL plugin for pytest☆48Updated 2 years ago
- NGS Language Bindings☆118Updated last year
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated 10 months ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- ☆107Updated this week
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- This is the development fork - Stable code has been moved to ==>☆25Updated 5 years ago
- Utilities for building and managing bioconda recipes☆103Updated last month
- Project Manager for NGS data analysis☆30Updated 2 weeks ago
- Test data for MultiQC.☆21Updated 3 weeks ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Updated 3 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 10 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆79Updated 6 months ago
- Genomics Research Container Architecture☆48Updated 6 years ago
- See the main fork of this repository here >>>☆38Updated 5 months ago
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆36Updated 4 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆70Updated last month
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Nextflow basic tutorial for newbie users☆33Updated 7 years ago
- Generic Interactive Variant Analysis browser☆29Updated 3 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago