ncbi / cwl-ngs-workflows-cbbLinks
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
☆26Updated 5 months ago
Alternatives and similar repositories for cwl-ngs-workflows-cbb
Users that are interested in cwl-ngs-workflows-cbb are comparing it to the libraries listed below
Sorting:
- ☆108Updated last month
- conda recipes for genomic data☆84Updated 4 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- Genomics Research Container Architecture☆48Updated 6 years ago
- ☆36Updated 9 months ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated last week
- Test data for MultiQC.☆24Updated last month
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated last year
- Project Manager for NGS data analysis☆30Updated last week
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 8 months ago
- Deduplication based on custom inline DNA barcodes.☆21Updated 7 years ago
- The command-line interface to GGD☆43Updated 3 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Updated 8 months ago
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆30Updated 3 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Updated 3 months ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Galaxy Admin Training☆60Updated last month
- List of computational resources for analyzing microbial sequencing data.☆67Updated 2 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- DEvis: an R package for aggregation and visualization of differential expression data☆20Updated 5 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- ☆13Updated 8 years ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆33Updated 4 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆59Updated 2 years ago
- Simulation of rare and common variants based on 1000 genomes data☆19Updated 4 years ago
- CWL for GDC DNASeq workflows☆23Updated this week
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆77Updated last month
- A collection of modules and sub-workflows for Nextflow☆28Updated 2 months ago
- An interactive web-tool for RNA-seq analysis☆70Updated last month