ncbi / cwl-ngs-workflows-cbb
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
☆22Updated last year
Alternatives and similar repositories for cwl-ngs-workflows-cbb:
Users that are interested in cwl-ngs-workflows-cbb are comparing it to the libraries listed below
- Project Manager for NGS data analysis☆29Updated 2 years ago
- ☆35Updated last year
- The snakemake interface, currently works like a notebook (under development)☆18Updated 3 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆34Updated 3 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆67Updated last month
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 4 months ago
- ☆19Updated 2 years ago
- The Ensembl Variation Perl API and SQL schema☆27Updated last week
- ☆27Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆56Updated last week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆26Updated 2 weeks ago
- Fast fusion detection using kallisto☆80Updated 2 months ago
- The command-line interface to GGD☆42Updated 2 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆50Updated 3 weeks ago
- A Teaching Engine for Genomics☆11Updated 3 years ago
- Portable WDL workflows for IDseq production pipelines☆31Updated 2 years ago
- Class materials for the NIH HPC snakemake class☆16Updated 3 months ago
- Genetic Relationship And Fingerprinting☆13Updated last year
- An interactive learning resource for next-generation sequencing (NGS) techniques☆27Updated 6 years ago
- Mapped QC analysis program☆42Updated 6 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 9 months ago
- FusionInspector code☆57Updated 2 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Client for the Bioconductor AnnotationHub web resource☆17Updated 2 months ago
- This is the development fork - Stable code has been moved to ==>☆23Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 5 years ago