ncbi / cwl-ngs-workflows-cbbLinks
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
☆24Updated 3 weeks ago
Alternatives and similar repositories for cwl-ngs-workflows-cbb
Users that are interested in cwl-ngs-workflows-cbb are comparing it to the libraries listed below
Sorting:
- ☆37Updated 4 months ago
- ☆107Updated 2 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated last year
- List of computational resources for analyzing microbial sequencing data.☆68Updated 2 months ago
- conda recipes for genomic data☆85Updated 4 years ago
- Project Manager for NGS data analysis☆31Updated 3 years ago
- NGS Language Bindings☆119Updated last year
- small RNA analysis from NGS data☆37Updated 11 months ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- A collection of modules and sub-workflows for Nextflow☆27Updated last week
- An interactive web-tool for RNA-seq analysis☆68Updated 6 months ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆75Updated last week
- ☆82Updated 3 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated 2 months ago
- Ensembl tools☆35Updated 4 months ago
- ☆28Updated 5 years ago
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆87Updated this week
- Test data for MultiQC.☆22Updated 2 weeks ago
- A modular annotation tool for genomic variants☆127Updated last week
- Workflow management with Nextflow and nf-core☆25Updated 7 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆79Updated 5 months ago
- GraphBio: a shiny web app to easily perform popular visualization analysis for omics data☆33Updated 2 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆71Updated 8 months ago
- Utilities for building and managing bioconda recipes☆103Updated 2 weeks ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- DEvis: an R package for aggregation and visualization of differential expression data☆20Updated 4 years ago