A straightforward and complete next-generation sequencing read simulator
☆22Feb 18, 2024Updated 2 years ago
Alternatives and similar repositories for sandy
Users that are interested in sandy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆71Jun 14, 2026Updated 3 weeks ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- Scripts for analyses in the Griffin manuscript☆12Dec 14, 2022Updated 3 years ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 9 months ago
- ☆12Jun 23, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Jun 19, 2026Updated 2 weeks ago
- Harmonization of AMR predictor tool outputs☆25Jan 14, 2025Updated last year
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 5 months ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- JIP Pipeline System☆19Feb 5, 2018Updated 8 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- 🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing☆14May 22, 2026Updated last month
- Web app for automated, systematic, and integrated RNA-seq differential expression analysis☆15May 1, 2026Updated 2 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- quickly filter fastq files by matching sequences to a set of regex patterns☆59Apr 18, 2026Updated 2 months ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21May 4, 2026Updated 2 months ago
- AlfaPang builds pangenome graphs without alignments or references.☆16Nov 7, 2025Updated 7 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆25Mar 7, 2026Updated 3 months ago
- ☆32Jun 21, 2026Updated 2 weeks ago
- Gene-flank analysis tool☆37Dec 18, 2024Updated last year
- Python bindings to spoa☆22Dec 3, 2025Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆29Apr 24, 2026Updated 2 months ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 22, 2026Updated 2 weeks ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated 4 months ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Jul 5, 2022Updated 4 years ago
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆19Mar 3, 2025Updated last year
- Rounded Bar Plots☆19May 1, 2026Updated 2 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Mar 7, 2026Updated 3 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- ☆15Nov 23, 2023Updated 2 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆32Feb 10, 2026Updated 4 months ago
- Reference bias measuring toolkit☆20Mar 12, 2026Updated 3 months ago
- ☆13May 30, 2023Updated 3 years ago