galantelab / sandyLinks
A straightforward and complete next-generation sequencing read simulator
☆21Updated last year
Alternatives and similar repositories for sandy
Users that are interested in sandy are comparing it to the libraries listed below
Sorting:
- An R Package for Multiplex PCR Primer Design and Analysis☆29Updated 4 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last week
- Gene Ontology subgraph visualizations☆20Updated last year
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆29Updated 6 months ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated this week
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated 10 months ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 11 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation☆20Updated 11 months ago
- ☆27Updated 5 years ago
- pathway based data integration and visualization☆41Updated 7 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Master of Pores 2☆23Updated 11 months ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 6 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Nanopore Real-Time Analysis Tool☆15Updated last year