galantelab / sandyLinks
A straightforward and complete next-generation sequencing read simulator
☆22Updated last year
Alternatives and similar repositories for sandy
Users that are interested in sandy are comparing it to the libraries listed below
Sorting:
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 2 months ago
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆32Updated last month
- Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions☆71Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆56Updated last year
- interactive plots for differential expression analysis☆34Updated 7 months ago
- An R Package for Multiplex PCR Primer Design and Analysis☆29Updated 6 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆29Updated last year
- OPAL: Open-community Profiling Assessment tooL☆30Updated 3 weeks ago
- A catalogue of available long read sequencing data analysis tools☆85Updated 3 weeks ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆45Updated last month
- pathway based data integration and visualization☆46Updated 10 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆57Updated 2 years ago
- Intersect multiple VCF files with haplotype awareness☆26Updated 4 years ago
- MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation☆20Updated last year
- A python package and a set of shell commands to handle GTF files☆50Updated last week
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated last year
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Updated last month
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Updated 4 months ago