Worked example showing how to cluster and visualize flow/mass cytometry data using FlowSOM and Rtsne
☆17Jan 30, 2017Updated 9 years ago
Alternatives and similar repositories for FlowSOM-Rtsne-example
Users that are interested in FlowSOM-Rtsne-example are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆49Feb 15, 2017Updated 9 years ago
- Interactive visulizations for track-based genomic data in R☆15Sep 9, 2024Updated 2 years ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Oct 13, 2019Updated 7 years ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆11Dec 13, 2022Updated 3 years ago
- ☆12Sep 20, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool to identify, annotate and visualise splicing switch events from RNA-seq data☆14Aug 26, 2015Updated 11 years ago
- A binary tree algorithm for automatic gating in cytometry analysis☆11Jul 26, 2025Updated last year
- ☆12May 14, 2024Updated 2 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- A flexible parser generator producing output from object-oriented hierarchical context-free grammar specifications.☆12Nov 16, 2021Updated 4 years ago
- Cytometry dATa anALYsis Tools☆75Apr 28, 2026Updated 6 months ago
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 3 years ago
- VitaminP: a vision transformer-assisted multimodal integration network for pathology cell segmentation☆13Oct 14, 2026Updated 2 weeks ago
- weighted indexes for clustering evaluation☆16Apr 18, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- workflow for Alfred App to query urbandictionary's API and return word definitions☆15Sep 23, 2021Updated 5 years ago
- Analysis of single cell RNA-Seq data from Veres et al.☆14Dec 10, 2019Updated 6 years ago
- R scripts to help with your flow cytometry analysis☆28Jun 17, 2022Updated 4 years ago
- Software and test files for Recon: Reconstruction of Estimated Communities from Observed Numbers☆14Dec 16, 2025Updated 10 months ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- ☆11May 3, 2022Updated 4 years ago
- ☆12Sep 29, 2026Updated last month
- ☆15Jan 16, 2024Updated 2 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The complete FlowSOM package known from R, now available in Python!☆35Updated this week
- Trans-association between HLA and TCR-CDR3☆20Mar 29, 2023Updated 3 years ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- Reproducibility notebooks for resolVI manuscript☆14Apr 17, 2026Updated 6 months ago
- ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps☆23Oct 12, 2017Updated 9 years ago
- Implementation of efficient Graph-based Image segmentation paper☆10May 19, 2020Updated 6 years ago
- ☆10Jan 24, 2021Updated 5 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆37Jan 6, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for working with CyToF data☆26May 11, 2020Updated 6 years ago
- Processing workflow for COVID-19 single cell data☆17Dec 23, 2021Updated 4 years ago
- ☆18Apr 6, 2023Updated 3 years ago
- R as a backend for web apps.☆10Mar 7, 2018Updated 8 years ago
- Immunology Informatics - Big Data Analysis in Immunology - Tutorials☆24Sep 9, 2017Updated 9 years ago
- This repo contains notes for (some) courses made during core years at IISERM. CAUTION: Contain some cool stuff too.☆10Nov 27, 2023Updated 2 years ago
- A package for the analysis of Imaging Mass Cytometry data☆17Mar 25, 2026Updated 7 months ago