Alternatives and similar repositories for SEUDO:

Users that are interested in SEUDO are comparing it to the libraries listed below

• nel-lab / FIOLA
  ☆34Updated last year
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• EricThomson / CCN_caiman_mesmerize_workshop_2023
  Repo for CCN workshop on caiman and mesmerize in January 2023
  ☆13Updated 2 years ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆17Updated last week
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆25Updated last year
• zivlab / island
  Revealing neural correlates of behavior without behavioral measurements
  ☆14Updated 5 years ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆18Updated last week
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated last month
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆21Updated last year
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆40Updated 3 weeks ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆25Updated 6 years ago
• MouseLand / neuropop
  analysis tools for large-scale neural recordings
  ☆14Updated last month
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆49Updated last year
• calebweinreb / SNUB
  ☆27Updated 9 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated 11 months ago
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 6 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆29Updated 5 years ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆32Updated this week
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated this week
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆44Updated 2 years ago
• neuroinformatics-unit / python-cookiecutter
  Utility to create a basic Python project structure with tests, CI etc.
  ☆28Updated 3 weeks ago
• zhoupc / OASIS_matlab
  ☆36Updated 3 years ago
• flatironinstitute / dendro-old
  Analyze neuroscience data in the cloud
  ☆18Updated 7 months ago
• llerussell / Bruker_PrairieLink
  Stream data from PrairieView into MATLAB to allow online processing and analysis
  ☆11Updated last year
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆37Updated last year
• bkntr / brainways
  Brainways
  ☆16Updated last week
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆16Updated last year
• catalystneuro / roiextractors
  Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…
  ☆13Updated this week
• phflot / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆23Updated 9 months ago