ProGraphMSA is a state-of-the-art multiple sequence alignment tool which produces phylogenetically sensible gap patterns while maintaining robustness by allowing alternative splicings and errors in the branching pattern of the guide tree. Fork of ProGraphMSA+TR from https://sourceforge.net/projects/prographmsa
☆11Sep 29, 2020Updated 6 years ago
Alternatives and similar repositories for ProGraphMSA
Users that are interested in ProGraphMSA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆17Jun 23, 2026Updated 4 months ago
- Pan gGnome Viewer☆10Sep 24, 2026Updated last month
- A rust library for Dioxus that offers the Bulma CSS components.☆10May 3, 2026Updated 6 months ago
- ☆10Oct 16, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Graphical Representation of Ancestral Sequence Predictions☆15Mar 6, 2023Updated 3 years ago
- 🦀🎮 A Rust crate to help port Bevy games to Nintendo Switch using emulators - no NDAs required.☆14Nov 29, 2025Updated 11 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- ☆14Sep 21, 2026Updated last month
- Domain based annotation of transposable elements☆25Jul 21, 2026Updated 3 months ago
- ARG-Needle library for representing and analyzing ancestral recombination graphs (ARGs)☆10Nov 21, 2025Updated 11 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆11Feb 20, 2024Updated 2 years ago
- Shepherd: accurate clustering for correcting DNA barcode errors: https://doi.org/10.1093/bioinformatics/btac395☆13Oct 15, 2026Updated 3 weeks ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- ☆43Jun 8, 2023Updated 3 years ago
- Centromere sequence analysis using rare k-mer markers☆12Jun 26, 2026Updated 4 months ago
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)☆13Aug 24, 2026Updated 2 months ago
- Computational suite for analyzing chromosomes and centromeres based on distance values between DNA motifs☆12Mar 5, 2026Updated 8 months ago
- Thinking tools for AI agents making discoveries in the life sciences☆11Aug 8, 2026Updated 2 months ago
- ☆27Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 8 years ago
- ☆11Mar 25, 2019Updated 7 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- ☆13Sep 11, 2025Updated last year
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆12Apr 20, 2022Updated 4 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆51Jun 7, 2023Updated 3 years ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆24Jan 27, 2022Updated 4 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆18Oct 26, 2026Updated last week
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆41Oct 12, 2026Updated 3 weeks ago
- ☆19May 10, 2023Updated 3 years ago
- Ascertained Sequentially Markovian Coalescent☆19Updated this week
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Nov 29, 2022Updated 3 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year