nmclark2 / SCIONLinks
Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)
☆12Updated last year
Alternatives and similar repositories for SCION
Users that are interested in SCION are comparing it to the libraries listed below
Sorting:
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- Evolutionary Transcriptomics with R☆46Updated 2 weeks ago
- Fully automated generation of UCSC assembly hubs☆34Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆32Updated 3 years ago
- ☆35Updated 2 years ago
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- ☆63Updated 4 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- A collection of command line tools for working with sequencing data☆52Updated last month
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated last month
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated last year
- Merging paired-end reads and removing adapters☆46Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- A software for calculating telomere length☆72Updated 7 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆23Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- visual analysis of your VCF files☆38Updated 2 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Pipeline for Phylostratigraphy☆13Updated 3 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 11 months ago
- tspex: tissue-specificity calculator☆34Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated 11 months ago
- PHAST☆75Updated last week