nmclark2 / SCIONLinks
Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)
☆12Updated 11 months ago
Alternatives and similar repositories for SCION
Users that are interested in SCION are comparing it to the libraries listed below
Sorting:
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Evolutionary Transcriptomics with R☆45Updated last week
- An efficient way to guess the library type of your RNA-Seq data.☆32Updated 3 years ago
- Fully automated generation of UCSC assembly hubs☆34Updated last year
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated 10 months ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 10 months ago
- A catalogue of available long read sequencing data analysis tools☆79Updated 2 weeks ago
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- ☆63Updated 4 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Genome wide orthology inference and dNdS estimation☆96Updated last month
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆30Updated 2 years ago
- Algorithms to compute DNA complexity☆34Updated 3 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 6 months ago
- ☆35Updated 2 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆50Updated 8 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago
- Tools for querying and analysis of genomic data☆27Updated last month
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 3 weeks ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- Adapters for trimming☆30Updated 6 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago