nmclark2 / SCIONLinks
Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)
☆12Updated last year
Alternatives and similar repositories for SCION
Users that are interested in SCION are comparing it to the libraries listed below
Sorting:
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Evolutionary Transcriptomics with R☆49Updated 2 weeks ago
- Adapters for trimming☆30Updated 6 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 months ago
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- Maximum likelihood demultiplexing☆49Updated 9 months ago
- ☆63Updated 4 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated last year
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated last year
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- My bioinfo toolbox☆50Updated 9 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 5 months ago
- ☆35Updated 2 years ago