nmclark2 / SCIONLinks
Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)
☆12Updated last year
Alternatives and similar repositories for SCION
Users that are interested in SCION are comparing it to the libraries listed below
Sorting:
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Evolutionary Transcriptomics with R☆49Updated last month
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated 10 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 months ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆30Updated 2 years ago
- microRNA PREdiction From small RNA-seq data☆30Updated 7 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated last year
- ☆63Updated 5 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- Genome wide orthology inference and dNdS estimation☆96Updated 3 months ago
- Reduce + Visualize Gene Ontology☆34Updated 4 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- ☆33Updated 3 weeks ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 8 months ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- tspex: tissue-specificity calculator☆35Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago