nmclark2 / SCIONLinks
Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)
☆12Updated last year
Alternatives and similar repositories for SCION
Users that are interested in SCION are comparing it to the libraries listed below
Sorting:
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Evolutionary Transcriptomics with R☆47Updated last month
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆28Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- microRNA PREdiction From small RNA-seq data☆30Updated 8 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆56Updated last year
- A catalogue of available long read sequencing data analysis tools☆83Updated this week
- ☆45Updated last year
- visual analysis of your VCF files☆38Updated 3 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆54Updated last year
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Transposable element polymorphism identification☆34Updated 5 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- Adapters for trimming☆30Updated 6 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆30Updated 3 weeks ago
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- web documentation for Trinotate☆48Updated 2 years ago
- ☆35Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆26Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- Maximum likelihood demultiplexing☆50Updated 10 months ago
- Visualize whole genome alignments as linear maps☆74Updated 5 months ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago