Alternatives and similar repositories for LucaVirus

Users that are interested in LucaVirus are comparing it to the libraries listed below

• LucaOne / LucaPCycle
  We developed a dual-channel model named LucaPCycle, based on the raw sequence and protein language large models, to predict whether a pro…
  ☆29Updated 3 weeks ago
• zjlab-BioGene / AMP-SEMiner
  Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…
  ☆13Updated 6 months ago
• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆52Updated 7 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 5 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated last month
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆116Updated 6 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆30Updated 3 months ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆58Updated 7 months ago
• PeterDeWeirdt / defense_predictor
  Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense
  ☆14Updated last month
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆102Updated last year
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆91Updated 3 weeks ago
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆21Updated last year
• AlvaroRodriguezDelRio / nov-fams-pipeline
  ☆11Updated 8 months ago
• HUST-NingKang-Lab / BGC-Prophet
  A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …
  ☆18Updated 2 weeks ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆60Updated 5 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆97Updated 9 months ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆88Updated 3 months ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆116Updated last year
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆134Updated last week
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆15Updated 6 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆73Updated last week
• tlawrence3 / amPEPpy
  ☆29Updated last year
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆155Updated 2 years ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆157Updated 3 weeks ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆161Updated last year
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆109Updated this week
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆29Updated 7 months ago
• lingxusb / megaDNA
  ☆74Updated last year
• Jaimomar99 / deeplocpro
  DeepLocPro repository.
  ☆13Updated 11 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated 2 months ago