ZRChao / fastANCOM
A fast method for analysis of composition of microbiomes
☆8Updated 3 years ago
Alternatives and similar repositories for fastANCOM
Users that are interested in fastANCOM are comparing it to the libraries listed below
Sorting:
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 weeks ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- R package for fetching and parsing data of the Human Microbiome Compendium☆10Updated 3 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last week
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- ☆10Updated 4 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 11 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Processing support for Greengenes2☆12Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Pan-genome Analysis☆11Updated last week
- ☆18Updated 4 years ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 2 months ago
- ☆13Updated 5 years ago
- ☆11Updated last year
- De novo VIral Genome Annotator☆21Updated 8 months ago
- ☆12Updated 8 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- tidyMicro GitHup Repository☆17Updated 3 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Updated 6 years ago
- Plot microbiome time series in parallel☆26Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 2 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago