yijuanhu / LDM-Archive
Linear Decomposition Model
☆24Updated last year
Alternatives and similar repositories for LDM-Archive:
Users that are interested in LDM-Archive are comparing it to the libraries listed below
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆14Updated 2 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- ☆20Updated 4 years ago
- Speedy versions of phyloseq functions☆47Updated 11 months ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆9Updated 3 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆35Updated 9 years ago
- A microbiome analysis toolkit for R☆22Updated last year
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated this week
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- ☆13Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- functions for analyzing phyloseq data☆26Updated last month
- Transform files to the microtable object with microeco package☆25Updated 3 months ago
- ☆10Updated 2 weeks ago
- diversity estimation under ecological networks☆83Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆32Updated 5 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- ☆19Updated last year
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- STAMPS 2018 course☆16Updated 6 years ago
- ggplots for nested data☆10Updated 8 months ago