YutingPKU / Bulk_RNA-Seq_Workflow_SnakemakeLinks
STAR, cufflinks, cluster, DESeq2, GO analysis
☆14Updated 5 years ago
Alternatives and similar repositories for Bulk_RNA-Seq_Workflow_Snakemake
Users that are interested in Bulk_RNA-Seq_Workflow_Snakemake are comparing it to the libraries listed below
Sorting:
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆16Updated 2 years ago
- ☆25Updated last year
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Updated 4 years ago
- bioinformatics R test code☆14Updated 2 weeks ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- Analysis pipelines for cancer genome sequencing in mice.☆21Updated 11 months ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Updated 5 years ago
- Scripts for plotting figures and running analysis throughout the manuscript☆11Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆10Updated 2 months ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆16Updated 2 years ago
- ☆17Updated 5 years ago
- HTCA Analysis Tools☆6Updated 2 years ago
- An R package to visualize bigwigs.☆31Updated 3 years ago
- ☆13Updated 4 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆15Updated 5 years ago
- ☆49Updated 11 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆28Updated 3 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- ☆27Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆25Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆20Updated 4 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆22Updated 3 years ago
- Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.☆14Updated last month
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆25Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago