Alternatives and similar repositories for Bulk_RNA-Seq_Workflow_Snakemake:

Users that are interested in Bulk_RNA-Seq_Workflow_Snakemake are comparing it to the libraries listed below

• xiayh17 / RNAseqStat2
  ☆16Updated last year
• WRui / Post_Implantation
  ☆27Updated 3 years ago
• wenweixiong / MARVEL
  ☆47Updated 8 months ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆29Updated 2 years ago
• reedliu / scRNA-codes
  ☆17Updated 5 years ago
• Henikoff / scCUT-Tag
  ☆16Updated last year
• YeoLab / Expedition
  Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data
  ☆11Updated 7 years ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆13Updated 2 weeks ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• MGI-tech-bioinformatics / DNBelab_C_Series_scRNA-analysis-software
  An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
  ☆28Updated 2 years ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆22Updated 2 years ago
• ChengLiLab / CSC2018
  Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…
  ☆11Updated 4 years ago
• ElkonLab / scAPA
  This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.
  ☆19Updated 3 years ago
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 2 years ago
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆20Updated last year
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 3 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆31Updated 3 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆17Updated 4 years ago
• StatBiomed / SingleCell-Workshop-2021
  Module 4 for HKU Single-cell Workshop
  ☆12Updated 3 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• StatBiomed / CamoTSS
  Detection and couting alternative TSS in single cells
  ☆14Updated 11 months ago
• zhaoshuoxp / Pipelines-Wrappers
  Shell wrappers for common NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.
  ☆13Updated 2 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆41Updated 9 months ago
• lkmklsmn / MitoTrace
  ☆17Updated 9 months ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆35Updated last year
• tzhu-bio / cisDynet
  An integrated platform for modeling gene-regulatory dynamics and networks
  ☆31Updated 8 months ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆23Updated last year
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆24Updated 8 months ago