YutingPKU / Bulk_RNA-Seq_Workflow_SnakemakeLinks
STAR, cufflinks, cluster, DESeq2, GO analysis
☆14Updated 5 years ago
Alternatives and similar repositories for Bulk_RNA-Seq_Workflow_Snakemake
Users that are interested in Bulk_RNA-Seq_Workflow_Snakemake are comparing it to the libraries listed below
Sorting:
- ☆16Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆12Updated 4 years ago
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Updated 5 years ago
- bioinformatics R test code☆14Updated last week
- ATAC-seq processing pipeline☆34Updated 3 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- ☆25Updated last year
- ☆17Updated 5 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 2 years ago
- ☆18Updated 4 years ago
- Scripts for plotting figures and running analysis throughout the manuscript☆11Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- ☆51Updated last year
- ☆27Updated last year
- TWAS-pipeline☆23Updated 4 years ago
- Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.☆15Updated last week
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆32Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Advanced steps of the OSCA book☆13Updated 5 months ago
- ☆10Updated 4 months ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- An R package to visualize bigwigs.☆31Updated 3 years ago