Alternatives and similar repositories for scriptmanager

Users that are interested in scriptmanager are comparing it to the libraries listed below

• deeptools / docker-galaxy-hicexplorer
  Galaxy Docker Image for the HiCExplorer
  ☆10Updated 6 years ago
• elkebir-group / cnaviz
  ☆12Updated last year
• friendsofstrandseq / mosaicatcher-pipeline
  Integrated workflow for SV calling from single-cell Strand-seq data
  ☆24Updated 6 months ago
• epigen / scifiRNA-seq
  ☆12Updated 4 years ago
• Acribbs / TallyNN
  single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)
  ☆13Updated 2 years ago
• KHP-Informatics / DNAscanv2
  DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…
  ☆14Updated last year
• liulab-dfci / TRUST4_manuscript_evaluation
  TRUST4 manuscript evaluation
  ☆15Updated 3 years ago
• shahcompbio / wgs
  Whole genome workflows
  ☆12Updated 11 months ago
• iaaaka / evo-devo
  ☆12Updated 4 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• dekkerlab / matrix_paper
  Scripts and notebooks used in Akgol Oksuz et al. paper
  ☆11Updated 4 years ago
• NYU-BFX / RNA-Seq_Standard
  ☆11Updated 7 years ago
• ajank / balancer-paper
  Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…
  ☆10Updated 6 years ago
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆14Updated last month
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆16Updated last year
• CellProfiling / SingleCellProteogenomics
  Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model
  ☆13Updated last year
• vincenthahaut / FLASH-Seq
  ☆10Updated 3 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆20Updated last month
• ding-lab / BICSEQ2
  BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA
  ☆16Updated 4 years ago
• cruk-mi / mesa
  mesa package for Methylation Enrichment Sequencing Analysis
  ☆13Updated this week
• maglab / Age-associated_cancer_genome
  ☆13Updated 4 years ago
• daewoooo / StrandPhaseR
  R Package for phasing of single cell Strand-seq data
  ☆10Updated 8 months ago
• cheehongsg / CPU
  ChIA-PET Utilities
  ☆13Updated 3 years ago
• AlexandrovLab / EnsembleVariantCallingPipeline
  The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…
  ☆13Updated 2 months ago
• PacificBiosciences / hg002-ccs
  ☆15Updated 4 years ago
• etal / cnvkit-examples
  Example datasets for CNVkit (http://github.com/etal/cnvkit)
  ☆23Updated 7 years ago
• TheJacksonLaboratory / tcga_subtype_classification
  Detecting cancer subtypes with machine learning.
  ☆10Updated 5 years ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 3 years ago
• ICGC-TCGA-PanCancer / Seqware-BWA-Workflow
  This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
  ☆11Updated 2 years ago
• weng-lab / umitools
  A toolset for handling sequencing data with unique molecular identifiers (UMIs)
  ☆15Updated 7 years ago