PreibischLab / multiview-simulation
Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise
☆12Updated 2 years ago
Alternatives and similar repositories for multiview-simulation:
Users that are interested in multiview-simulation are comparing it to the libraries listed below
- ☆19Updated last month
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- Control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated this week
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆15Updated 2 months ago
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆24Updated this week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- PSFj - Know your microscope fluorescence☆21Updated 4 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆69Updated this week
- Lattice light-sheet post-processing utility.☆27Updated 3 weeks ago
- EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.☆19Updated 2 years ago
- ☆21Updated 3 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- python tools for BigDataViewer☆21Updated last month
- GPU Deconvolution Library with C and Matlab API for nVidia GPUs☆21Updated 5 years ago
- Various parts made for fluorescence microscopy + optics work☆16Updated 5 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆33Updated last month
- ImageJ convenience layer for N5☆16Updated last week
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆14Updated last year
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆27Updated 4 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 5 months ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆24Updated 2 years ago
- ☆12Updated 4 years ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆38Updated 3 months ago
- ☆12Updated 4 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆23Updated 3 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 4 months ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- Things we use regularly☆29Updated 5 months ago