clij / clijpy
GPU-accelerated image processing using CLIJ via pyimagej in python
☆10Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for clijpy
- Various parts made for fluorescence microscopy + optics work☆16Updated 5 years ago
- Control, reconstruction, and analysis code for oblique plane microscopy.☆21Updated 3 months ago
- Lattice light-sheet post-processing utility.☆27Updated this week
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆15Updated last month
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated this week
- ☆10Updated last year
- my first baby steps with Napari☆10Updated 4 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆11Updated 3 years ago
- python tools for BigDataViewer☆21Updated last year
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆15Updated this week
- Things we use regularly☆29Updated 2 months ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆25Updated last month
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- ☆11Updated 9 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Image acquisition software for mesoSPIM light-sheet microscopes.☆36Updated this week
- Pure python/C++ micro-manager ecosystem☆31Updated this week
- ☆13Updated 4 years ago
- napari plugin for trackastra☆12Updated 2 weeks ago
- Dataset EXploration & Processing☆31Updated last year
- ☆31Updated 6 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- PSFj - Know your microscope fluorescence☆19Updated 4 years ago
- Running compute-intense parts of BigStitcher distributed☆18Updated this week
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14Updated 4 years ago
- ☆12Updated 4 years ago
- 1d plotting in napari-based canvas.☆24Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated 2 months ago
- A set of Qt-based widgets onto the pymmcore-plus model☆11Updated this week
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆23Updated 4 years ago