GPU-accelerated image processing using CLIJ via pyimagej in python
☆10Jan 8, 2021Updated 5 years ago
Alternatives and similar repositories for clijpy
Users that are interested in clijpy are comparing it to the libraries listed below
Sorting:
- SLM binary mask generator for Lattice Light Sheet microscopy☆12Dec 2, 2021Updated 4 years ago
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- GPU Deconvolution Library with C and Matlab API for nVidia GPUs☆21Mar 2, 2019Updated 7 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 11 months ago
- ImageJ plugin suite for image feature extraction☆10Dec 17, 2015Updated 10 years ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- ☆10Nov 29, 2024Updated last year
- A toolbox to illustrate the use of CUDA together with Matlab.☆10Jan 5, 2017Updated 9 years ago
- Collection of literature, math, etc. for Structured Illumination Microscopy☆10Apr 23, 2019Updated 6 years ago
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- AutoTx - an intelligent background file transfer service for Windows.☆28Feb 13, 2026Updated 2 weeks ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image☆46Jul 20, 2021Updated 4 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 2 years ago
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Python image segmentation plugin☆31Jan 13, 2021Updated 5 years ago
- Lattice light-sheet post-processing utility.☆30Feb 2, 2026Updated last month
- This Toolbox is build for 3D correlative microscopy. It helps with 3D to 2D correlation of three dimensional confocal image stacks to two…☆12Apr 27, 2020Updated 5 years ago
- ☆13Apr 27, 2020Updated 5 years ago
- ImageJ plugin for building figures☆16Sep 13, 2023Updated 2 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 2 years ago
- Quantitative analysis of cell motility behaviors☆13Feb 21, 2025Updated last year
- Various parts made for fluorescence microscopy + optics work☆16Jul 22, 2019Updated 6 years ago
- 3D segmention tool☆13Apr 6, 2023Updated 2 years ago
- Python package for optical flow estimation☆15Dec 25, 2022Updated 3 years ago
- Jupyter notebooks for CellProfiler and friends☆14Mar 23, 2018Updated 7 years ago
- ☆15Feb 5, 2025Updated last year
- CLIJ is deprecated. Visit CLIJ2☆56Jun 12, 2021Updated 4 years ago
- ilastik plugin for napari☆14Dec 15, 2025Updated 2 months ago
- Single-Molecule Localization Microscopy - Software Benchmarking - Challenge 2016☆18Jan 26, 2019Updated 7 years ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆17Feb 6, 2026Updated 3 weeks ago
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- AutoPilot library☆15Nov 15, 2016Updated 9 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated last month
- For laying organizational groundwork☆18Jul 12, 2020Updated 5 years ago