Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
☆83Mar 6, 2026Updated last month
Alternatives and similar repositories for SCALEX
Users that are interested in SCALEX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated last week
- Single-cell ATAC-seq analysis via Latent feature Extraction☆104Aug 23, 2023Updated 2 years ago
- the analysis script for PrismNet☆10May 17, 2020Updated 5 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 11 months ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆34Apr 15, 2025Updated 11 months ago
- ☆66Jul 13, 2023Updated 2 years ago
- ☆23Mar 29, 2023Updated 3 years ago
- a unified single-cell data integration framework by optimal transport☆37Oct 1, 2024Updated last year
- singleCellNet in Python☆16Feb 25, 2026Updated last month
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- Benchmarking analysis of data integration tools☆409Sep 17, 2025Updated 6 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Single Cell Classification using RNA-seq data and Supervised Learning Algorithms☆13May 7, 2016Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆40Dec 29, 2022Updated 3 years ago
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 3 months ago
- exRNA Biomarker Discovery for Liquid Biopsy☆13Oct 29, 2020Updated 5 years ago
- Supervised cell type identification for scATAC-seq data☆14Aug 23, 2023Updated 2 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆33Mar 18, 2026Updated 3 weeks ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Nov 16, 2025Updated 4 months ago
- iterative clustering pipeline of big single cell datasets.☆38Sep 5, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆66Mar 3, 2024Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆84Apr 21, 2025Updated 11 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- Graph-linked unified embedding for single-cell multi-omics data integration☆460Feb 9, 2026Updated 2 months ago
- Gene group activity utility functions for Scanpy☆101Dec 21, 2024Updated last year
- Gain biological insights using LLM.☆16Jan 26, 2026Updated 2 months ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆16Jan 21, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated 2 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Dec 16, 2019Updated 6 years ago
- Predicting small molecule and RNA target interactions using deep neural networks (Nature Biotechnology, 2026)☆55Jan 5, 2026Updated 3 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆43Mar 2, 2025Updated last year
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆39Aug 22, 2024Updated last year
- Reference mapping for single-cell genomics☆401Mar 21, 2026Updated 3 weeks ago