jsxlei / SCALEXLinks
Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
☆79Updated 3 months ago
Alternatives and similar repositories for SCALEX
Users that are interested in SCALEX are comparing it to the libraries listed below
Sorting:
- ☆46Updated last year
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆29Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 5 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆111Updated 2 months ago
- ☆121Updated 7 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆47Updated 4 years ago
- ☆61Updated 2 years ago
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆116Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- Single cell omics biology annotations☆51Updated 8 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 5 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Multi-omic velocity inference☆113Updated last year
- ☆44Updated last year
- Gene group activity utility functions for Scanpy☆99Updated last year
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆32Updated 2 years ago
- Single-cell RNA-seq Gene Expression Recovery☆112Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 3 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆146Updated 2 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago
- R implementation of GeneTrajectory☆68Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆61Updated 3 weeks ago
- cTPnet Package☆27Updated 3 years ago
- Spatial transcriptomics of heart tissue☆105Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated last month
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year